Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | PRR80_RS12415 | Genome accession | NZ_CP117166 |
| Coordinates | 2653763..2654260 (+) | Length | 165 a.a. |
| NCBI ID | WP_017827302.1 | Uniprot ID | - |
| Organism | Proteus mirabilis strain 181-3b | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2611503..2658528 | 2653763..2654260 | within | 0 |
Gene organization within MGE regions
Location: 2611503..2658528
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PRR80_RS12135 (PRR80_12135) | - | 2611503..2611928 (+) | 426 | WP_099659355.1 | antirestriction protein | - |
| PRR80_RS12140 (PRR80_12140) | - | 2612169..2612603 (+) | 435 | WP_006814844.1 | antirestriction protein | - |
| PRR80_RS12145 (PRR80_12145) | - | 2612705..2613541 (+) | 837 | WP_250250211.1 | DUF932 domain-containing protein | - |
| PRR80_RS12150 (PRR80_12150) | - | 2614169..2614903 (+) | 735 | WP_219108978.1 | outer membrane protein | - |
| PRR80_RS12155 (PRR80_12155) | - | 2615045..2615908 (+) | 864 | WP_219108981.1 | hypothetical protein | - |
| PRR80_RS12160 (PRR80_12160) | - | 2615925..2616293 (+) | 369 | WP_240102567.1 | hypothetical protein | - |
| PRR80_RS12165 (PRR80_12165) | - | 2616290..2616652 (+) | 363 | WP_214208557.1 | hypothetical protein | - |
| PRR80_RS12170 (PRR80_12170) | - | 2617701..2618075 (+) | 375 | WP_273630045.1 | hypothetical protein | - |
| PRR80_RS12175 (PRR80_12175) | - | 2618541..2618771 (+) | 231 | WP_233902349.1 | helix-turn-helix domain-containing protein | - |
| PRR80_RS12180 (PRR80_12180) | - | 2618949..2620361 (-) | 1413 | WP_273630046.1 | hypothetical protein | - |
| PRR80_RS12185 (PRR80_12185) | - | 2620436..2621449 (-) | 1014 | WP_152964252.1 | DUF6453 family protein | - |
| PRR80_RS12190 (PRR80_12190) | - | 2621439..2625176 (-) | 3738 | WP_273630050.1 | phage tail tip fiber protein | - |
| PRR80_RS12195 (PRR80_12195) | - | 2625177..2625575 (-) | 399 | WP_049210594.1 | DUF6950 family protein | - |
| PRR80_RS12200 (PRR80_12200) | - | 2625629..2625904 (-) | 276 | WP_250316864.1 | hypothetical protein | - |
| PRR80_RS12205 (PRR80_12205) | - | 2625918..2626499 (-) | 582 | WP_104836564.1 | hypothetical protein | - |
| PRR80_RS12210 (PRR80_12210) | - | 2626496..2627095 (-) | 600 | WP_273630062.1 | hypothetical protein | - |
| PRR80_RS12215 (PRR80_12215) | - | 2627096..2630401 (-) | 3306 | WP_273630064.1 | phage tail tape measure protein | - |
| PRR80_RS12220 (PRR80_12220) | - | 2630658..2631008 (-) | 351 | WP_017827267.1 | phage tail protein | - |
| PRR80_RS12225 (PRR80_12225) | - | 2631008..2631484 (-) | 477 | WP_017827268.1 | major tail shaft subunit | - |
| PRR80_RS12230 (PRR80_12230) | - | 2631507..2631911 (-) | 405 | WP_017827269.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| PRR80_RS12235 (PRR80_12235) | - | 2631908..2632297 (-) | 390 | WP_017827270.1 | hypothetical protein | - |
| PRR80_RS12240 (PRR80_12240) | - | 2632284..2632610 (-) | 327 | WP_112843676.1 | phage head closure protein | - |
| PRR80_RS12245 (PRR80_12245) | - | 2632617..2632958 (-) | 342 | WP_371014621.1 | head-tail connector protein | - |
| PRR80_RS12250 (PRR80_12250) | - | 2633005..2634234 (-) | 1230 | WP_196557400.1 | phage major capsid protein | - |
| PRR80_RS12255 (PRR80_12255) | - | 2634250..2634855 (-) | 606 | WP_036905264.1 | HK97 family phage prohead protease | - |
| PRR80_RS12260 (PRR80_12260) | - | 2634845..2636074 (-) | 1230 | WP_036905261.1 | phage portal protein | - |
| PRR80_RS12265 (PRR80_12265) | - | 2636064..2636225 (-) | 162 | WP_167759273.1 | hypothetical protein | - |
| PRR80_RS12270 (PRR80_12270) | - | 2636222..2637955 (-) | 1734 | WP_273630075.1 | terminase large subunit | - |
| PRR80_RS12275 (PRR80_12275) | - | 2637959..2638429 (-) | 471 | WP_196535178.1 | phage terminase small subunit P27 family | - |
| PRR80_RS12280 (PRR80_12280) | - | 2638576..2638773 (-) | 198 | WP_049218006.1 | hypothetical protein | - |
| PRR80_RS12285 (PRR80_12285) | - | 2638770..2639120 (-) | 351 | WP_273630082.1 | HNH endonuclease | - |
| PRR80_RS12290 (PRR80_12290) | - | 2639181..2639531 (-) | 351 | WP_273630084.1 | hypothetical protein | - |
| PRR80_RS12295 (PRR80_12295) | - | 2640080..2640541 (-) | 462 | WP_004250565.1 | lysis protein | - |
| PRR80_RS12300 (PRR80_12300) | - | 2640544..2640702 (-) | 159 | WP_004250562.1 | hypothetical protein | - |
| PRR80_RS12305 (PRR80_12305) | - | 2640684..2641154 (-) | 471 | WP_004250560.1 | lysozyme | - |
| PRR80_RS12310 (PRR80_12310) | - | 2641154..2641423 (-) | 270 | WP_049211167.1 | bacteriophage protein | - |
| PRR80_RS12315 (PRR80_12315) | - | 2641787..2641981 (+) | 195 | WP_273630097.1 | DUF1883 domain-containing protein | - |
| PRR80_RS12320 (PRR80_12320) | - | 2642030..2642209 (-) | 180 | WP_049219097.1 | hypothetical protein | - |
| PRR80_RS12325 (PRR80_12325) | - | 2642323..2643345 (-) | 1023 | WP_273630100.1 | DNA-methyltransferase | - |
| PRR80_RS12330 (PRR80_12330) | - | 2643413..2643592 (-) | 180 | WP_126656782.1 | hypothetical protein | - |
| PRR80_RS12335 (PRR80_12335) | - | 2643769..2644449 (-) | 681 | WP_036901017.1 | bacteriophage antitermination protein Q | - |
| PRR80_RS12340 (PRR80_12340) | - | 2644477..2645502 (-) | 1026 | WP_259695805.1 | DUF968 domain-containing protein | - |
| PRR80_RS12345 (PRR80_12345) | - | 2645499..2646302 (-) | 804 | WP_273630111.1 | KilA-N domain-containing protein | - |
| PRR80_RS12350 (PRR80_12350) | - | 2646321..2646704 (-) | 384 | WP_036904907.1 | RusA family crossover junction endodeoxyribonuclease | - |
| PRR80_RS12355 (PRR80_12355) | - | 2646777..2647172 (-) | 396 | WP_049210572.1 | hypothetical protein | - |
| PRR80_RS12360 (PRR80_12360) | - | 2647169..2647807 (-) | 639 | WP_141192256.1 | phage N-6-adenine-methyltransferase | - |
| PRR80_RS12365 (PRR80_12365) | - | 2647807..2648868 (-) | 1062 | WP_273630121.1 | conserved phage C-terminal domain-containing protein | - |
| PRR80_RS12370 (PRR80_12370) | - | 2648865..2649059 (-) | 195 | WP_420492261.1 | hypothetical protein | - |
| PRR80_RS12375 (PRR80_12375) | - | 2649056..2649229 (-) | 174 | WP_004251659.1 | hypothetical protein | - |
| PRR80_RS12380 (PRR80_12380) | - | 2649317..2649775 (-) | 459 | WP_036900998.1 | YmfL family putative regulatory protein | - |
| PRR80_RS12385 (PRR80_12385) | - | 2649791..2650300 (-) | 510 | WP_237612479.1 | hypothetical protein | - |
| PRR80_RS12390 (PRR80_12390) | - | 2650510..2650725 (-) | 216 | WP_273630135.1 | helix-turn-helix domain-containing protein | - |
| PRR80_RS12395 (PRR80_12395) | - | 2650823..2651512 (+) | 690 | WP_049211705.1 | XRE family transcriptional regulator | - |
| PRR80_RS12400 (PRR80_12400) | - | 2651660..2651863 (+) | 204 | WP_273630136.1 | hypothetical protein | - |
| PRR80_RS12405 (PRR80_12405) | rdgC | 2652259..2653155 (+) | 897 | WP_074924366.1 | recombination-associated protein RdgC | - |
| PRR80_RS12410 (PRR80_12410) | - | 2653237..2653770 (+) | 534 | WP_196749318.1 | HD family hydrolase | - |
| PRR80_RS12415 (PRR80_12415) | ssb | 2653763..2654260 (+) | 498 | WP_017827302.1 | single-stranded DNA-binding protein | Machinery gene |
| PRR80_RS12420 (PRR80_12420) | - | 2654300..2654473 (+) | 174 | WP_174820767.1 | DUF7167 family protein | - |
| PRR80_RS12425 (PRR80_12425) | - | 2654476..2655171 (+) | 696 | WP_064506364.1 | hypothetical protein | - |
| PRR80_RS12430 (PRR80_12430) | - | 2655171..2655566 (+) | 396 | WP_064506363.1 | hypothetical protein | - |
| PRR80_RS12440 (PRR80_12440) | - | 2655791..2656972 (+) | 1182 | WP_126656794.1 | site-specific integrase | - |
| PRR80_RS12445 (PRR80_12445) | - | 2657288..2658528 (+) | 1241 | Protein_2408 | integrase | - |
Sequence
Protein
Download Length: 165 a.a. Molecular weight: 18066.48 Da Isoelectric Point: 7.1640
>NTDB_id=782491 PRR80_RS12415 WP_017827302.1 2653763..2654260(+) (ssb) [Proteus mirabilis strain 181-3b]
MANGSVNKVILIGNLGRDPEIRYLPSGGAIAYLAVATSEKWRDKQTGENREKTEWHRVVLFGKLADIASGYLCKGSQVYI
EGQLQTREWDDNGVKRYTTEVVVRIGGTLQMLGGASKSAGSQPAQQNPPPAQPQAQSSQPPMDFEDDIPFAPIGLMYPRH
LINVV
MANGSVNKVILIGNLGRDPEIRYLPSGGAIAYLAVATSEKWRDKQTGENREKTEWHRVVLFGKLADIASGYLCKGSQVYI
EGQLQTREWDDNGVKRYTTEVVVRIGGTLQMLGGASKSAGSQPAQQNPPPAQPQAQSSQPPMDFEDDIPFAPIGLMYPRH
LINVV
Nucleotide
Download Length: 498 bp
>NTDB_id=782491 PRR80_RS12415 WP_017827302.1 2653763..2654260(+) (ssb) [Proteus mirabilis strain 181-3b]
ATGGCTAACGGATCAGTAAACAAAGTAATTCTTATCGGCAATTTAGGGCGTGATCCTGAAATTCGTTATCTTCCTTCTGG
TGGTGCTATTGCTTATTTAGCTGTGGCCACATCAGAGAAATGGCGTGACAAACAAACGGGTGAAAATCGCGAAAAAACAG
AATGGCATCGTGTTGTTCTGTTTGGAAAACTCGCTGATATCGCCAGTGGCTATTTGTGTAAAGGCTCGCAAGTTTATATC
GAGGGCCAACTACAAACGCGCGAGTGGGATGATAACGGCGTTAAACGCTACACAACAGAAGTTGTTGTAAGGATTGGAGG
CACATTGCAGATGTTGGGCGGTGCTAGTAAATCAGCAGGATCACAACCAGCACAGCAAAACCCGCCACCTGCTCAACCTC
AAGCACAGAGTAGTCAGCCACCAATGGATTTTGAGGATGATATTCCCTTCGCACCTATTGGGCTTATGTATCCACGCCAT
TTAATTAATGTGGTTTAA
ATGGCTAACGGATCAGTAAACAAAGTAATTCTTATCGGCAATTTAGGGCGTGATCCTGAAATTCGTTATCTTCCTTCTGG
TGGTGCTATTGCTTATTTAGCTGTGGCCACATCAGAGAAATGGCGTGACAAACAAACGGGTGAAAATCGCGAAAAAACAG
AATGGCATCGTGTTGTTCTGTTTGGAAAACTCGCTGATATCGCCAGTGGCTATTTGTGTAAAGGCTCGCAAGTTTATATC
GAGGGCCAACTACAAACGCGCGAGTGGGATGATAACGGCGTTAAACGCTACACAACAGAAGTTGTTGTAAGGATTGGAGG
CACATTGCAGATGTTGGGCGGTGCTAGTAAATCAGCAGGATCACAACCAGCACAGCAAAACCCGCCACCTGCTCAACCTC
AAGCACAGAGTAGTCAGCCACCAATGGATTTTGAGGATGATATTCCCTTCGCACCTATTGGGCTTATGTATCCACGCCAT
TTAATTAATGTGGTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
55.932 |
100 |
0.6 |
| ssb | Glaesserella parasuis strain SC1401 |
48.889 |
100 |
0.533 |
| ssb | Neisseria meningitidis MC58 |
41.379 |
100 |
0.436 |
| ssb | Neisseria gonorrhoeae MS11 |
41.379 |
100 |
0.436 |