Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PQE20_RS08530 Genome accession   NZ_CP117054
Coordinates   1792806..1793357 (-) Length   183 a.a.
NCBI ID   WP_069687505.1    Uniprot ID   -
Organism   Vibrio harveyi strain VH21FL     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1787806..1798357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQE20_RS08510 (PQE20_08510) - 1788116..1788445 (-) 330 WP_009698822.1 hypothetical protein -
  PQE20_RS08515 (PQE20_08515) gspM 1788438..1789088 (-) 651 WP_005444327.1 type II secretion system protein GspM -
  PQE20_RS08520 (PQE20_08520) - 1789085..1790533 (-) 1449 WP_005444325.1 MSHA biogenesis protein MshI -
  PQE20_RS08525 (PQE20_08525) csrD 1790545..1792554 (-) 2010 WP_009698823.1 RNase E specificity factor CsrD -
  PQE20_RS08530 (PQE20_08530) ssb 1792806..1793357 (-) 552 WP_069687505.1 single-stranded DNA-binding protein Machinery gene
  PQE20_RS08535 (PQE20_08535) qstR 1793652..1794296 (+) 645 WP_009698824.1 LuxR C-terminal-related transcriptional regulator Regulator
  PQE20_RS08540 (PQE20_08540) galU 1794458..1795330 (+) 873 WP_005444317.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  PQE20_RS08545 (PQE20_08545) uvrA 1795468..1798290 (+) 2823 WP_069687506.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20446.51 Da        Isoelectric Point: 4.9269

>NTDB_id=782384 PQE20_RS08530 WP_069687505.1 1792806..1793357(-) (ssb) [Vibrio harveyi strain VH21FL]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQQQQQQGGWGQPQQPAQQQQYNAPQQQQQQQQQ
QAPQQQQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=782384 PQE20_RS08530 WP_069687505.1 1792806..1793357(-) (ssb) [Vibrio harveyi strain VH21FL]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACGATTGCAACTTCTGAGTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTATTCGGCAAGCTTGCTGAAGTAGCGGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGTCAAGATCGCTACTCAACAGAAGTGGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGCTCCAATGGGTGGCGGTCAACAACAGCAGCAACAAG
GCGGCTGGGGTCAACCTCAACAACCGGCTCAACAGCAGCAATACAACGCTCCTCAGCAACAGCAACAGCAACAGCAACAA
CAGGCTCCGCAGCAACAACAGCCGCAATATAACGAGCCGCCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.57

100

0.809
  ssb Glaesserella parasuis strain SC1401

55.263

100

0.574
  ssb Neisseria gonorrhoeae MS11

46.961

98.907

0.464
  ssb Neisseria meningitidis MC58

46.111

98.361

0.454