Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   PQE20_RS00440 Genome accession   NZ_CP117054
Coordinates   104101..104688 (+) Length   195 a.a.
NCBI ID   WP_005444533.1    Uniprot ID   A0A9X3RTZ3
Organism   Vibrio harveyi strain VH21FL     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 99101..109688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQE20_RS00420 (PQE20_00420) panP 99294..100940 (-) 1647 WP_272759384.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  PQE20_RS00425 (PQE20_00425) - 101062..101574 (-) 513 WP_005444538.1 hypothetical protein -
  PQE20_RS00430 (PQE20_00430) - 101786..102703 (-) 918 WP_272759385.1 lysine exporter LysO family protein -
  PQE20_RS00435 (PQE20_00435) - 102810..103730 (-) 921 WP_005444535.1 HDOD domain-containing protein -
  PQE20_RS00440 (PQE20_00440) tfoX 104101..104688 (+) 588 WP_005444533.1 TfoX/Sxy family DNA transformation protein Regulator
  PQE20_RS00445 (PQE20_00445) - 104898..105446 (-) 549 WP_005442235.1 hypothetical protein -
  PQE20_RS00450 (PQE20_00450) - 105654..106151 (-) 498 WP_272759386.1 response regulator -
  PQE20_RS00455 (PQE20_00455) - 106148..108088 (-) 1941 WP_009698121.1 ATP-binding protein -
  PQE20_RS00460 (PQE20_00460) - 108274..109536 (+) 1263 WP_272759387.1 DUF945 family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22312.52 Da        Isoelectric Point: 6.4656

>NTDB_id=782368 PQE20_RS00440 WP_005444533.1 104101..104688(+) (tfoX) [Vibrio harveyi strain VH21FL]
MDMTDQAFFNYVSNFSEYQKRSMFGGIGLFSNDAMFALVSNDCCYLRGGNGLDEEFTQLNCEKYKHVKKQTTATVNYYDV
TDLFDSGFAGLDALLQKSIECSIKERKYQKSSASRRLRDLPNMQLTLERMVKKAGIDDVETFLELGPVEVFNKVRVTYGS
DVDVKLLWKFAGATDGIHWKLLQEPRKKQLLAMCE

Nucleotide


Download         Length: 588 bp        

>NTDB_id=782368 PQE20_RS00440 WP_005444533.1 104101..104688(+) (tfoX) [Vibrio harveyi strain VH21FL]
ATGGACATGACAGACCAAGCTTTTTTTAACTATGTAAGCAATTTTAGTGAGTACCAAAAACGTTCAATGTTTGGCGGGAT
TGGTTTATTCAGCAACGACGCAATGTTCGCACTAGTAAGTAACGACTGTTGTTATTTACGTGGTGGTAACGGGTTAGATG
AAGAATTTACTCAACTAAACTGTGAAAAATATAAGCACGTCAAAAAACAAACGACGGCAACCGTTAACTACTATGATGTA
ACCGATCTATTTGACTCAGGTTTTGCGGGTCTAGACGCGTTGTTACAAAAATCGATTGAATGTTCTATTAAGGAACGTAA
ATACCAAAAGTCTTCAGCCAGTAGACGTTTGCGTGACCTACCCAATATGCAGTTGACGCTAGAGCGTATGGTCAAAAAAG
CAGGTATTGATGACGTAGAAACGTTTTTGGAACTAGGACCAGTAGAAGTATTTAATAAAGTAAGAGTGACATACGGTAGT
GATGTTGATGTGAAGCTTCTATGGAAGTTTGCTGGCGCCACTGATGGTATTCACTGGAAGCTGCTCCAAGAACCACGCAA
GAAACAACTGCTGGCAATGTGTGAATAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-192)

TfoX N-terminal domain (TfoX_N)

(11-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio campbellii strain DS40M4

96.41

100

0.964
  tfoX Vibrio parahaemolyticus RIMD 2210633

91.282

100

0.913
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

68.912

98.974

0.682
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

68.912

98.974

0.682
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

68.912

98.974

0.682
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

68.912

98.974

0.682
  tfoX Vibrio cholerae strain A1552

68.912

98.974

0.682
  tfoX Aliivibrio fischeri ES114

59.686

97.949

0.585