Detailed information    

insolico Bioinformatically predicted

Overview


Name   micB   Type   Regulator
Locus tag   PO908_RS04255 Genome accession   NZ_CP117042
Coordinates   786937..788289 (+) Length   450 a.a.
NCBI ID   WP_394468113.1    Uniprot ID   -
Organism   Streptococcus anginosus strain CGMH_KH1     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 781937..793289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PO908_RS04230 (PO908_04210) ccpA 782088..783092 (+) 1005 WP_022526272.1 catabolite control protein A Regulator
  PO908_RS04235 (PO908_04215) - 783272..784270 (+) 999 WP_021001528.1 glycosyltransferase family 4 protein -
  PO908_RS04240 (PO908_04220) - 784272..785585 (+) 1314 WP_057489614.1 glycosyltransferase family 4 protein -
  PO908_RS04245 (PO908_04225) - 785612..785953 (+) 342 WP_021001530.1 hypothetical protein -
  PO908_RS04250 (PO908_04230) micA 786243..786944 (+) 702 WP_021001531.1 response regulator YycF Regulator
  PO908_RS04255 (PO908_04235) micB 786937..788289 (+) 1353 WP_394468113.1 cell wall metabolism sensor histidine kinase VicK Regulator
  PO908_RS04260 (PO908_04240) vicX 788292..789095 (+) 804 WP_021001533.1 MBL fold metallo-hydrolase Regulator
  PO908_RS04265 (PO908_04245) - 789104..789464 (+) 361 Protein_800 YbaN family protein -
  PO908_RS04270 (PO908_04250) rnc 789846..790544 (+) 699 WP_021001534.1 ribonuclease III -

Sequence


Protein


Download         Length: 450 a.a.        Molecular weight: 51379.69 Da        Isoelectric Point: 4.7649

>NTDB_id=782249 PO908_RS04255 WP_394468113.1 786937..788289(+) (micB) [Streptococcus anginosus strain CGMH_KH1]
MIDNIRQFIVSKDFVFVLLILGFILVITLLSLENRRDNVRIRQMNQKVKDLIAGNYSEILDVQGGPEITDITNSINDLSE
VIRLTHENLEQETKRLSSILSYMTDGVLATNRRGQIIMINDMATKQLGVKESEARKMNILKLLDIEDEYDLRDLITKVPE
LTIDSQDENGEFLSLRVRFALIRRESGFISGLVAVLHDTTEQEKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALS
EPVAPDFIKVSLDETNRMMRMVSDLLSLSRIDNATSHLDIELTNFTAFITFILNRFDKIRSQNDDKKYEIIRDYPINSIW
VEIDTDKMTQVIDNIINNAIKYSPDGGKITVSMKTTDTQMILSISDEGLGIPKKDLPKIFDRFYRVDKARSRAQGGSGLG
LAIAKEIIKQHNGFIWAKSEYGKGSTFTIVLPYDKEAVKDDDWEEDKLEG

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=782249 PO908_RS04255 WP_394468113.1 786937..788289(+) (micB) [Streptococcus anginosus strain CGMH_KH1]
ATGATTGATAATATTAGACAATTTATTGTATCAAAAGACTTTGTATTTGTTTTACTTATTTTAGGGTTCATCTTGGTGAT
TACCTTGCTTTCCTTGGAAAACAGGCGTGACAACGTTCGTATTCGCCAAATGAATCAAAAAGTAAAAGATTTAATTGCAG
GCAATTACTCAGAAATTTTAGATGTACAAGGTGGTCCAGAAATTACGGATATTACCAACAGTATCAATGATTTATCTGAG
GTAATCCGTCTAACGCATGAAAATTTAGAGCAAGAAACTAAGCGCCTGTCGAGTATTTTATCCTATATGACGGACGGCGT
TCTTGCGACCAATCGTCGTGGGCAGATTATCATGATTAATGATATGGCGACCAAGCAGTTGGGGGTCAAAGAATCCGAAG
CACGAAAGATGAATATCTTAAAACTGTTGGATATCGAAGACGAATATGACTTACGAGACTTGATTACGAAAGTTCCAGAA
TTGACCATTGATTCGCAGGATGAAAATGGAGAGTTTTTAAGTTTACGTGTTCGATTTGCCTTGATTCGGCGAGAATCAGG
CTTTATTTCAGGGCTGGTTGCAGTGTTACACGATACAACGGAGCAGGAAAAAGAAGAGCGTGAGCGGAGACTGTTTGTTT
CGAATGTCAGTCACGAATTACGTACTCCCTTGACCAGTGTCAAGTCTTATCTGGAAGCACTAGATGAAGGTGCCTTATCA
GAACCAGTCGCACCGGATTTCATCAAGGTTTCATTAGACGAGACAAATCGGATGATGCGCATGGTTTCGGACTTGCTGAG
TTTGTCACGTATTGACAATGCAACCAGTCATTTGGATATTGAATTGACGAATTTTACAGCTTTTATCACCTTTATTTTGA
ACCGTTTTGATAAAATCAGAAGCCAGAATGATGATAAAAAGTATGAAATTATACGAGATTATCCGATTAACTCTATTTGG
GTCGAAATTGATACAGATAAGATGACACAGGTGATTGATAATATTATCAACAATGCCATTAAATATTCTCCTGACGGTGG
TAAAATTACGGTCAGTATGAAAACGACGGATACCCAAATGATTTTGTCGATTTCAGATGAAGGCTTAGGAATTCCTAAAA
AAGATTTGCCGAAAATTTTTGATAGATTTTATCGTGTAGACAAAGCAAGAAGTCGCGCCCAAGGTGGATCCGGACTGGGC
TTAGCCATTGCCAAAGAGATTATCAAGCAACATAACGGCTTTATCTGGGCAAAGAGCGAGTACGGCAAAGGCTCGACGTT
TACAATCGTTCTGCCATATGACAAAGAAGCTGTCAAAGATGATGATTGGGAAGAAGATAAATTAGAAGGATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micB Streptococcus pneumoniae Cp1015

80.866

97.556

0.789

  vicK Streptococcus mutans UA159

71.638

90.889

0.651