Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   PO908_RS03715 Genome accession   NZ_CP117042
Coordinates   665568..666599 (+) Length   343 a.a.
NCBI ID   WP_021001472.1    Uniprot ID   A0A1S1FGZ6
Organism   Streptococcus anginosus strain CGMH_KH1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 660568..671599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PO908_RS03690 (PO908_03675) - 660767..661081 (+) 315 WP_003073302.1 PTS cellobiose transporter subunit IIB -
  PO908_RS03695 (PO908_03680) - 661137..663128 (+) 1992 WP_021001469.1 transcription antiterminator -
  PO908_RS03700 (PO908_03685) - 663141..663458 (+) 318 WP_021001470.1 PTS cellobiose transporter subunit IIA -
  PO908_RS03705 (PO908_03690) - 663481..663987 (+) 507 WP_037590317.1 hypothetical protein -
  PO908_RS03710 (PO908_03695) celB 664027..665370 (+) 1344 WP_021001471.1 PTS cellobiose transporter subunit IIC -
  PO908_RS03715 (PO908_03700) coiA 665568..666599 (+) 1032 WP_021001472.1 competence protein CoiA Machinery gene
  PO908_RS03720 (PO908_03705) pepF 666551..668353 (+) 1803 WP_021001473.1 oligoendopeptidase F Regulator
  PO908_RS03725 (PO908_03710) - 668355..669038 (+) 684 WP_003025376.1 O-methyltransferase -
  PO908_RS03730 (PO908_03715) prsA 669145..670083 (+) 939 WP_003025374.1 peptidylprolyl isomerase PrsA -
  PO908_RS03735 (PO908_03720) - 670221..670790 (+) 570 WP_080553209.1 LURP-one-related/scramblase family protein -

Sequence


Protein


Download         Length: 343 a.a.        Molecular weight: 40828.25 Da        Isoelectric Point: 9.5121

>NTDB_id=782242 PO908_RS03715 WP_021001472.1 665568..666599(+) (coiA) [Streptococcus anginosus strain CGMH_KH1]
MLMACQENGKMLNAVEDTVNPLDRFLCPACKEAVRFKNGKVMRPHFAHISLKECHFYTENESAEHLNLKAVLFTWARKSN
HAIQVEAYLPKLQQIADLLVEKQIVLEVQCSSLSQKRLKERTESYRQHGYRVLWLLGKKLWLKNTLTNLQKDFLYFSQNM
GFHLWELDEQKQLLRLKYLIHEDLHGKVQYKEKSFAFGKGNLLDIFRQPFCKQEMTSFLAKEDKNICRYVRQQLYYQQPK
WMKWQAELYQTGDNLLTKTASDFYPQVQPVRSSSFCQIFQDLTPYYQQFSAYYEKEKNKNLQILYPPAFYAKIFGNIYDK
IGKTEEILWQNKEMKLKKNTLGT

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=782242 PO908_RS03715 WP_021001472.1 665568..666599(+) (coiA) [Streptococcus anginosus strain CGMH_KH1]
ATGTTAATGGCTTGTCAGGAAAACGGAAAAATGCTAAATGCTGTGGAAGATACGGTAAATCCGTTGGATAGGTTTCTCTG
CCCGGCTTGTAAGGAAGCGGTGCGATTTAAGAATGGCAAGGTGATGCGACCGCACTTTGCTCATATTTCTTTAAAAGAAT
GTCATTTTTATACGGAAAATGAAAGTGCAGAACACTTAAATCTGAAAGCTGTTTTGTTTACTTGGGCTAGAAAGTCCAAT
CATGCGATTCAAGTGGAAGCGTATTTACCTAAATTGCAACAAATTGCAGATCTGTTAGTAGAGAAACAAATTGTGCTTGA
AGTTCAGTGTAGCTCACTTAGTCAAAAACGCTTAAAAGAGCGTACGGAAAGTTATCGTCAGCATGGCTATCGCGTTCTTT
GGCTCTTGGGAAAGAAACTTTGGCTGAAAAATACTTTGACCAATTTACAAAAGGATTTTCTCTATTTCAGTCAAAATATG
GGCTTTCATCTGTGGGAATTGGACGAACAAAAACAGCTTTTGAGGCTTAAATACTTGATTCATGAAGATTTGCATGGCAA
GGTTCAGTATAAGGAGAAAAGTTTTGCTTTTGGTAAAGGAAACCTTTTAGACATCTTTCGTCAGCCATTCTGCAAGCAGG
AAATGACGAGTTTTCTGGCAAAAGAAGATAAAAATATTTGCCGTTATGTGCGCCAGCAGCTCTACTATCAGCAGCCCAAA
TGGATGAAATGGCAGGCAGAATTGTATCAAACGGGTGATAATTTATTGACCAAAACGGCTAGTGACTTTTACCCGCAAGT
CCAACCTGTTCGTTCCAGCTCTTTCTGTCAGATTTTTCAGGATCTCACGCCTTATTACCAGCAATTTTCAGCTTATTATG
AAAAAGAAAAAAATAAAAATCTCCAAATTCTCTATCCTCCAGCTTTTTATGCAAAGATTTTTGGCAATATTTATGATAAA
ATAGGAAAGACGGAGGAAATTTTATGGCAAAACAAAGAAATGAAATTGAAGAAAAATACACTTGGGACCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A1S1FGZ6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

53.822

91.545

0.493

  coiA Streptococcus pneumoniae Rx1

53.185

91.545

0.487

  coiA Streptococcus pneumoniae D39

53.185

91.545

0.487

  coiA Streptococcus pneumoniae R6

53.185

91.545

0.487

  coiA Streptococcus pneumoniae TIGR4

52.866

91.545

0.484

  coiA Lactococcus lactis subsp. cremoris KW2

43.827

94.461

0.414