Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   Q3V23_RS09740 Genome accession   NZ_CP130487
Coordinates   2244823..2246967 (-) Length   714 a.a.
NCBI ID   WP_302860032.1    Uniprot ID   A0ABW6TY18
Organism   Streptomyces sp. VNUA116     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2239823..2251967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V23_RS09725 (Q3V23_09725) - 2240927..2241973 (-) 1047 WP_302860030.1 TerC family protein -
  Q3V23_RS09730 (Q3V23_09730) - 2242094..2243968 (-) 1875 WP_302860031.1 TerD family protein -
  Q3V23_RS09735 (Q3V23_09735) - 2244087..2244665 (-) 579 WP_106681282.1 TerD family protein -
  Q3V23_RS09740 (Q3V23_09740) uvrB 2244823..2246967 (-) 2145 WP_302860032.1 excinuclease ABC subunit UvrB Machinery gene
  Q3V23_RS09745 (Q3V23_09745) - 2247191..2248156 (+) 966 WP_302860033.1 glycerophosphodiester phosphodiesterase family protein -
  Q3V23_RS09750 (Q3V23_09750) - 2248282..2248866 (+) 585 WP_302860034.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  Q3V23_RS09755 (Q3V23_09755) - 2248992..2250422 (+) 1431 WP_302860035.1 WGR domain-containing protein -
  Q3V23_RS09760 (Q3V23_09760) - 2250488..2250805 (+) 318 WP_302860036.1 DUF6343 family protein -

Sequence

Protein


Download         Length: 714 a.a.        Molecular weight: 80016.11 Da        Isoelectric Point: 5.0066

>NTDB_id=782235 Q3V23_RS09740 WP_302860032.1 2244823..2246967(-) (uvrB) [Streptomyces sp. VNUA116]
MRPVSKIERKVAPFEVVSPFQPSGDQPTAIAELERRIRAGEKDVVLLGATGTGKSATTAWMIERLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVPLKVGQEIDRDDLLRRFVEIQYTRNDLAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EVISDDQELYVFPASHYIAGAERMEKAIAGIEKELEETLARMEKQGKLLEAQRLRMRTTYDIEMMRQIGSCSGIENYSLH
MDGREPGSPPNTLMDYFPEDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEHGFRLPSAMDNRPLKWEEFTERIGQTVYL
SATPGNYELSRSDGFVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRKRTEKDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKVTPAMEKAIEETNRRRAKQIAYNKERGIDPQPLRKKIGDIVATLAREEIDTQELLGSGYRDKGAKGKAPVPAAAGGK
AAGKGAKAAKGAKAKGAVAVTDKPAAELAQQIEDMTDRMRAAAAELQFEVAARLRDEVSELKKELRQMKEAGLA

Nucleotide


Download         Length: 2145 bp        

>NTDB_id=782235 Q3V23_RS09740 WP_302860032.1 2244823..2246967(-) (uvrB) [Streptomyces sp. VNUA116]
ATGCGGCCCGTATCGAAGATCGAACGCAAGGTGGCGCCTTTCGAGGTCGTCAGCCCCTTCCAGCCCAGCGGTGACCAGCC
CACGGCCATCGCCGAGCTGGAGCGACGTATCCGCGCAGGTGAGAAGGACGTCGTCCTCCTCGGTGCGACCGGCACCGGCA
AGTCCGCGACCACCGCGTGGATGATCGAGAGGCTCCAGCGGCCGACGCTCGTCATGGCGCCGAACAAGACCCTGGCGGCC
CAGCTCGCCAACGAGTTCCGCGAGCTCCTGCCCAACAATGCCGTCGAATACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCCTACGTTCCGCAGTCGGACACGTACATCGAGAAGGATTCCTCGATCAACGAGGAGGTGGAGCGGCTGCGCCACT
CCGCCACCAACTCCCTGCTCACCCGGCGTGACGTCGTGGTGGTGGCCTCGGTGTCCTGCATCTACGGCCTGGGCACCCCC
CAGGAGTACGTCGACCGCATGGTGCCGCTGAAGGTGGGCCAGGAGATCGACCGCGATGACCTGCTGCGCCGCTTCGTGGA
GATCCAGTACACCCGCAACGACCTCGCGTTCACCCGCGGCACCTTCCGCGTCCGGGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTCGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCGCTCTCCACGCTCCACCCGCTCACCGGA
GAGGTCATCTCCGACGACCAGGAGCTGTACGTCTTCCCCGCCAGCCACTACATCGCCGGTGCCGAGCGCATGGAGAAGGC
CATCGCCGGCATCGAGAAGGAGCTGGAGGAGACCCTCGCCCGGATGGAGAAGCAGGGCAAGCTCCTGGAGGCGCAGCGGC
TGCGCATGCGCACCACGTACGACATCGAGATGATGCGTCAGATCGGCTCCTGCTCCGGCATCGAGAACTACTCGCTGCAC
ATGGACGGCCGCGAGCCCGGCTCCCCGCCGAACACCCTCATGGACTACTTCCCGGAGGACTTCCTCCTCGTCATCGACGA
GTCGCACGTGACCGTCCCGCAGATCGGCGCCATGTACGAGGGGGACGCCTCCCGCAAGCGCACGCTGGTCGAGCACGGCT
TCCGGCTGCCGTCGGCCATGGACAACCGCCCGCTGAAGTGGGAGGAGTTCACCGAGCGCATCGGTCAGACGGTGTACCTC
TCGGCCACCCCCGGCAACTACGAGTTGTCCCGCTCCGACGGCTTCGTCGAGCAGATCATCCGCCCCACGGGCCTCGTCGA
CCCCGAGGTCGTCGTCAAGCCGACCGAGGGCCAGATCGACGACCTGGTGCACGAGATCCGCAAGCGCACCGAGAAGGACG
AGCGGGTCCTGGTCACCACCCTCACCAAGAAGATGGCCGAGGACCTCACGGACTACTTCCTGGAGCTCGGCATCCAGGTG
CGCTACCTGCACAGCGACGTCGACACGCTGCGCCGGGTGGAGCTGCTGCGCGAGCTGCGGGCCGGCGAGTACGACGTGCT
GGTCGGCATCAACCTGCTGCGCGAGGGCCTCGACCTGCCCGAGGTGTCCCTCGTCGCCATCCTGGACGCCGACAAGGAGG
GCTTCCTCCGCTCGGGGACGTCCCTCATCCAGACCATCGGCCGCGCGGCGCGCAACGTCTCCGGCCAGGTGCACATGTAC
GCCGACAAGGTCACCCCGGCGATGGAGAAGGCCATCGAGGAGACCAACCGCCGCCGGGCGAAGCAGATCGCGTACAACAA
GGAGCGGGGCATCGACCCCCAGCCCCTGCGCAAGAAGATCGGCGACATCGTCGCGACCCTCGCCCGCGAGGAGATCGACA
CCCAGGAGCTGCTGGGCTCGGGCTACCGCGACAAGGGCGCCAAGGGGAAGGCGCCCGTGCCCGCCGCCGCGGGCGGCAAG
GCGGCCGGCAAGGGGGCGAAGGCCGCCAAGGGCGCCAAGGCGAAGGGCGCCGTCGCGGTGACGGACAAGCCCGCCGCCGA
ACTGGCACAGCAGATCGAGGACATGACCGACCGTATGCGGGCCGCGGCCGCGGAGCTGCAGTTCGAGGTCGCCGCCCGGC
TGCGCGACGAGGTGAGCGAGCTCAAGAAGGAGCTGCGGCAGATGAAGGAGGCCGGCCTCGCCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(440-551)

UvrB/uvrC motif (UVR)

(670-704)

Ultra-violet resistance protein B (UvrB)

(559-600)

UvrB interaction domain (UvrB_inter)

(169-257)

Type III restriction enzyme, res subunit (ResIII)

(24-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

62.625

84.314

0.528
  uvrB Streptococcus pneumoniae R6

62.625

84.314

0.528
  uvrB Streptococcus pneumoniae D39

62.625

84.314

0.528