Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   LYZ37_RS09100 Genome accession   NZ_CP117029
Coordinates   1999048..1999635 (-) Length   195 a.a.
NCBI ID   WP_239825523.1    Uniprot ID   -
Organism   Vibrio tubiashii strain FP17     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1994048..2004635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LYZ37_RS09080 (LYZ37_09080) - 1994321..1995586 (-) 1266 WP_272785258.1 DUF945 family protein -
  LYZ37_RS09085 (LYZ37_09085) - 1995760..1997709 (+) 1950 WP_272785259.1 ATP-binding protein -
  LYZ37_RS09090 (LYZ37_09090) - 1997710..1998207 (+) 498 WP_004749037.1 response regulator -
  LYZ37_RS09095 (LYZ37_09095) - 1998374..1998940 (+) 567 WP_272785260.1 hypothetical protein -
  LYZ37_RS09100 (LYZ37_09100) tfoX 1999048..1999635 (-) 588 WP_239825523.1 TfoX/Sxy family DNA transformation protein Regulator
  LYZ37_RS09105 (LYZ37_09105) - 1999991..2000911 (+) 921 WP_272785261.1 HDOD domain-containing protein -
  LYZ37_RS09110 (LYZ37_09110) - 2000950..2001855 (+) 906 WP_272785262.1 lysine exporter LysO family protein -
  LYZ37_RS09115 (LYZ37_09115) - 2001972..2002484 (+) 513 WP_171801820.1 hypothetical protein -
  LYZ37_RS09120 (LYZ37_09120) panP 2002627..2004273 (+) 1647 WP_272785264.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22507.78 Da        Isoelectric Point: 9.3572

>NTDB_id=782112 LYZ37_RS09100 WP_239825523.1 1999048..1999635(-) (tfoX) [Vibrio tubiashii strain FP17]
MDMTEQQFIQYVQKFGDFQKRSMFGGTGLFRDEAMFALLSADKIFIRGGEALDETLNQLGCEKYRHVKKQTTATVNYYDI
TQLFSSQHQRLSELVEQSINFSVSQREFKRSSANRRLRDLPNMQLTLERMVKKAGVEDVDTFLELGAPAVFSRVKQAYGS
DVDVKLLWKFAGAIEGIHWKLIQEPRKRQLLASCH

Nucleotide


Download         Length: 588 bp        

>NTDB_id=782112 LYZ37_RS09100 WP_239825523.1 1999048..1999635(-) (tfoX) [Vibrio tubiashii strain FP17]
ATGGATATGACAGAGCAACAATTTATTCAATACGTACAAAAGTTTGGCGACTTTCAAAAACGATCTATGTTTGGTGGTAC
CGGGTTGTTTAGAGACGAAGCTATGTTCGCACTACTCAGTGCCGACAAAATATTCATCAGAGGTGGAGAAGCATTAGATG
AAACGCTTAACCAGCTAGGTTGTGAGAAATACCGTCATGTTAAGAAACAGACCACAGCGACGGTAAATTATTACGATATA
ACCCAGCTTTTTTCGAGCCAACATCAGCGACTGAGTGAGCTAGTAGAACAATCTATAAATTTTTCCGTATCGCAGCGTGA
GTTCAAGCGTTCATCGGCGAACCGACGCTTGCGTGATCTGCCGAATATGCAACTGACCTTAGAGCGTATGGTGAAAAAGG
CAGGGGTAGAGGATGTAGATACCTTTTTAGAACTTGGCGCACCTGCGGTCTTCTCAAGAGTGAAGCAAGCATATGGCAGT
GATGTAGATGTAAAGCTGCTGTGGAAATTCGCTGGTGCAATCGAAGGGATTCATTGGAAGCTCATTCAAGAACCACGTAA
ACGCCAACTATTGGCGAGTTGCCACTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(11-100)

TfoX C-terminal domain (TfoX_C)

(114-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

74.479

98.462

0.733
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

74.479

98.462

0.733
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

74.479

98.462

0.733
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

74.479

98.462

0.733
  tfoX Vibrio cholerae strain A1552

74.479

98.462

0.733
  tfoX Vibrio campbellii strain DS40M4

69.744

100

0.697
  tfoX Vibrio parahaemolyticus RIMD 2210633

66.667

100

0.667
  tfoX Aliivibrio fischeri ES114

57.592

97.949

0.564