Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PPZ50_RS02420 Genome accession   NZ_CP117025
Coordinates   485187..485747 (-) Length   186 a.a.
NCBI ID   WP_066692532.1    Uniprot ID   -
Organism   Sphingomonas hankookensis strain SZ.B2R2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 480187..490747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPZ50_RS02395 (PPZ50_02385) - 480353..482500 (+) 2148 WP_066692520.1 transglycosylase domain-containing protein -
  PPZ50_RS02400 (PPZ50_02390) - 482467..483255 (-) 789 WP_126012511.1 M48 family metallopeptidase -
  PPZ50_RS02405 (PPZ50_02395) - 483252..483698 (-) 447 WP_066692527.1 YcgN family cysteine cluster protein -
  PPZ50_RS02410 (PPZ50_02400) - 483686..484294 (-) 609 WP_066692822.1 SCO family protein -
  PPZ50_RS02415 (PPZ50_02405) - 484350..484946 (+) 597 WP_066692530.1 ankyrin repeat domain-containing protein -
  PPZ50_RS02420 (PPZ50_02410) ssb 485187..485747 (-) 561 WP_066692532.1 single-stranded DNA-binding protein Machinery gene
  PPZ50_RS02425 (PPZ50_02415) - 485848..486024 (+) 177 WP_084401707.1 DUF4169 family protein -
  PPZ50_RS02430 (PPZ50_02420) feoB 486144..487997 (-) 1854 WP_066692537.1 ferrous iron transporter B -
  PPZ50_RS02435 (PPZ50_02425) - 488012..488269 (-) 258 WP_066692545.1 FeoA family protein -
  PPZ50_RS02440 (PPZ50_02430) - 488334..489020 (-) 687 WP_066692549.1 COQ9 family protein -
  PPZ50_RS02445 (PPZ50_02435) - 489117..489365 (+) 249 WP_066692551.1 glutaredoxin domain-containing protein -
  PPZ50_RS02450 (PPZ50_02440) - 489475..490665 (+) 1191 WP_066692553.1 aromatic amino acid transaminase -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 19016.54 Da        Isoelectric Point: 5.2942

>NTDB_id=782082 PPZ50_RS02420 WP_066692532.1 485187..485747(-) (ssb) [Sphingomonas hankookensis strain SZ.B2R2]
MAGSVNKVILVGNLGRDPESRSFQNGGKVVNLRIATSESWKDRNSGERKEKTEWHSVAIFNEGLANVAERFLRKGSKVYI
EGQLQTRKWQDQNGQDKYSTEIVLQGFNSVLTMLDGPGGGQGGGGGNRGGGDFGGGDDFGGGSGGGYGGGGSRGGGSGGG
FNSGGNKGGNFGGGGFGDDLDDDVPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=782082 PPZ50_RS02420 WP_066692532.1 485187..485747(-) (ssb) [Sphingomonas hankookensis strain SZ.B2R2]
ATGGCCGGCAGCGTCAATAAAGTCATCCTCGTGGGCAATCTGGGCCGCGACCCGGAATCGCGGTCGTTCCAGAATGGCGG
CAAGGTCGTGAACCTGCGCATCGCGACGTCGGAATCGTGGAAGGACCGCAATTCGGGCGAGCGCAAGGAAAAGACCGAAT
GGCATTCGGTCGCGATCTTCAACGAAGGGCTGGCCAACGTCGCCGAGCGTTTCCTGCGCAAGGGCTCGAAGGTCTATATC
GAAGGCCAGCTCCAGACGCGGAAGTGGCAGGACCAGAACGGCCAGGACAAGTACAGCACCGAAATCGTGCTGCAGGGCTT
CAACAGCGTGCTGACGATGCTCGACGGTCCCGGCGGCGGCCAGGGCGGCGGCGGTGGCAACCGCGGCGGTGGCGACTTCG
GTGGCGGCGATGACTTCGGCGGCGGTTCGGGCGGCGGCTATGGCGGCGGCGGATCGCGCGGCGGCGGCAGCGGCGGCGGG
TTCAATTCCGGCGGCAACAAGGGCGGCAATTTCGGCGGCGGCGGCTTCGGCGACGATCTGGACGACGACGTACCGTTCTG
A

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.545

100

0.495
  ssb Vibrio cholerae strain A1552

47.802

97.849

0.468
  ssb Neisseria meningitidis MC58

37.037

100

0.376
  ssb Neisseria gonorrhoeae MS11

35.979

100

0.366