Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NL424_RS17125 Genome accession   NZ_CP117020
Coordinates   3499564..3500100 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain MLI106K3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3494564..3505100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL424_RS17105 (NL424_017100) aphA 3494852..3495565 (+) 714 WP_001226928.1 acid phosphatase AphA -
  NL424_RS17110 (NL424_017105) yjbQ 3495676..3496092 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  NL424_RS17115 (NL424_017110) yjbR 3496096..3496452 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  NL424_RS17120 (NL424_017115) uvrA 3496487..3499309 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  NL424_RS17125 (NL424_017120) ssb 3499564..3500100 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  NL424_RS17130 (NL424_017125) yjcB 3500199..3500480 (-) 282 WP_001295689.1 YjcB family protein -
  NL424_RS17135 (NL424_017130) pdeC 3500910..3502496 (+) 1587 WP_001550430.1 c-di-GMP phosphodiesterase PdeC -
  NL424_RS17140 (NL424_017135) soxS 3502499..3502822 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  NL424_RS17145 (NL424_017140) soxR 3502908..3503372 (+) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=782053 NL424_RS17125 WP_000168305.1 3499564..3500100(+) (ssb) [Escherichia coli strain MLI106K3]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=782053 NL424_RS17125 WP_000168305.1 3499564..3500100(+) (ssb) [Escherichia coli strain MLI106K3]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACTGAAGTGGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGCCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAATGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489