Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD3   Type   Regulator
Locus tag   M0P28_RS11045 Genome accession   NZ_CP116958
Coordinates   2175975..2176289 (-) Length   104 a.a.
NCBI ID   WP_003066552.1    Uniprot ID   E0PG50
Organism   Streptococcus pasteurianus strain WUSP074     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 2170975..2181289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0P28_RS11010 (M0P28_11010) rmuC 2171731..2173005 (-) 1275 WP_117479513.1 DNA recombination protein RmuC -
  M0P28_RS11015 (M0P28_11015) - 2173007..2173636 (-) 630 WP_003066545.1 thiamine diphosphokinase -
  M0P28_RS11020 (M0P28_11020) rpe 2173629..2174291 (-) 663 WP_003066548.1 ribulose-phosphate 3-epimerase -
  M0P28_RS11025 (M0P28_11025) rsgA 2174298..2175170 (-) 873 WP_013852268.1 ribosome small subunit-dependent GTPase A -
  M0P28_RS11040 (M0P28_11040) - 2175616..2175843 (-) 228 WP_003066551.1 hypothetical protein -
  M0P28_RS11045 (M0P28_11045) comD/comD3 2175975..2176289 (-) 315 WP_003066552.1 GHKL domain-containing protein Regulator
  M0P28_RS11050 (M0P28_11050) comE/comE2 2176691..2176912 (-) 222 WP_003066558.1 LytTR family transcriptional regulator DNA-binding domain-containing protein Regulator
  M0P28_RS11055 (M0P28_11055) - 2176884..2177246 (-) 363 WP_003066560.1 bacteriocin immunity protein -
  M0P28_RS11060 (M0P28_11060) - 2177803..2178114 (-) 312 WP_003066564.1 bacteriocin immunity protein -
  M0P28_RS11065 (M0P28_11065) - 2178976..2180136 (-) 1161 WP_117480154.1 IS110 family transposase -
  M0P28_RS11070 (M0P28_11070) - 2180416..2180553 (+) 138 WP_003066566.1 hypothetical protein -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 11894.38 Da        Isoelectric Point: 4.6112

>NTDB_id=781710 M0P28_RS11045 WP_003066552.1 2175975..2176289(-) (comD/comD3) [Streptococcus pasteurianus strain WUSP074]
MDCFEIPRITYIHNLAILFDNRIEAAVLSDVPKISVANFYQDDNFVFMIENSTKEDSIPIDTVYQKGYSSKGDNRSIGLA
TVIEFHQEYGKLPIETSSSNHLFR

Nucleotide


Download         Length: 315 bp        

>NTDB_id=781710 M0P28_RS11045 WP_003066552.1 2175975..2176289(-) (comD/comD3) [Streptococcus pasteurianus strain WUSP074]
ATGGATTGTTTCGAAATTCCACGTATTACCTACATTCATAACCTTGCTATTCTGTTTGATAATAGGATTGAAGCCGCAGT
ATTATCAGATGTTCCTAAAATATCCGTAGCGAATTTTTATCAAGATGATAACTTTGTTTTTATGATTGAAAATTCAACCA
AAGAAGATAGTATTCCGATTGATACCGTTTATCAAAAAGGCTATTCAAGCAAAGGTGATAATCGTAGTATTGGCTTAGCA
ACAGTTATTGAATTTCATCAAGAATATGGCAAGCTACCCATTGAAACAAGCAGCTCAAATCACCTCTTTAGATAA

Domains

Predicted by InterproScan.

GHKL domain (HATPase_c_5)

(15-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E0PG50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD3 Streptococcus equinus JB1

58.586

95.192

0.558
  comD/comD2 Streptococcus equinus JB1

54.369

99.038

0.538
  comD/comD1 Streptococcus equinus JB1

48.98

94.231

0.462
  comD/blpH Streptococcus mutans UA159

43

96.154

0.413