Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | PP479_RS26965 | Genome accession | NZ_CP116935 |
| Coordinates | 5710770..5711642 (+) | Length | 290 a.a. |
| NCBI ID | WP_034037193.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain CUVET18-860 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5705770..5716642
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PP479_RS26945 (PP479_26935) | - | 5706559..5707065 (-) | 507 | WP_225007572.1 | hypothetical protein | - |
| PP479_RS26950 (PP479_26940) | - | 5707154..5707618 (-) | 465 | WP_057386486.1 | pilin | - |
| PP479_RS26955 (PP479_26945) | pilB | 5707849..5709548 (+) | 1700 | Protein_5337 | type IV-A pilus assembly ATPase PilB | - |
| PP479_RS26960 (PP479_26950) | pilC | 5709552..5710769 (+) | 1218 | WP_003161763.1 | type II secretion system F family protein | Machinery gene |
| PP479_RS26965 (PP479_26955) | pilD | 5710770..5711642 (+) | 873 | WP_034037193.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| PP479_RS26970 (PP479_26960) | coaE | 5711639..5712250 (+) | 612 | WP_003112838.1 | dephospho-CoA kinase | - |
| PP479_RS26975 (PP479_26965) | yacG | 5712247..5712447 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| PP479_RS26980 (PP479_26970) | - | 5712484..5712693 (-) | 210 | WP_003094660.1 | hypothetical protein | - |
| PP479_RS26985 (PP479_26975) | - | 5712799..5713488 (-) | 690 | WP_003094662.1 | energy-coupling factor ABC transporter permease | - |
| PP479_RS26990 (PP479_26980) | - | 5713485..5713955 (-) | 471 | WP_003103866.1 | hypothetical protein | - |
| PP479_RS26995 (PP479_26985) | - | 5713952..5714377 (-) | 426 | WP_003103865.1 | GNAT family N-acetyltransferase | - |
| PP479_RS27000 (PP479_26990) | - | 5714510..5715139 (+) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| PP479_RS27005 (PP479_26995) | - | 5715136..5715585 (+) | 450 | WP_003094670.1 | MOSC domain-containing protein | - |
| PP479_RS27010 (PP479_27000) | - | 5715611..5715781 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31783.78 Da Isoelectric Point: 7.7068
>NTDB_id=781377 PP479_RS26965 WP_034037193.1 5710770..5711642(+) (pilD) [Pseudomonas aeruginosa strain CUVET18-860]
MTLLDYLASHPLAFVLCTILLGLLVGSFLNVVAHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLASYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALLGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MTLLDYLASHPLAFVLCTILLGLLVGSFLNVVAHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLASYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALLGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=781377 PP479_RS26965 WP_034037193.1 5710770..5711642(+) (pilD) [Pseudomonas aeruginosa strain CUVET18-860]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAATGTCGTCGCGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGCCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTAGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCTTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAATGTCGTCGCGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGCCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTAGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCTTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.357 |
96.552 |
0.534 |
| pilD | Vibrio campbellii strain DS40M4 |
52.65 |
97.586 |
0.514 |
| pilD | Acinetobacter nosocomialis M2 |
50.53 |
97.586 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.53 |
97.586 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
50.19 |
90.69 |
0.455 |