Detailed information NTG0781372

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: QZL36_RS05965
• Genome accession: NZ_CP129932
• Coordinates: 1271254..1272258 (+)
• Length: 334 a.a.
• NCBI ID: WP_005457270.1
• Uniprot ID: Q87QU7
• Organism: Vibrio parahaemolyticus isolate BM18B
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1266254..1277258

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QZL36_RS05945	aspS	1266538..1268316 (+)	1779	WP_005483110.1	aspartate--tRNA ligase	-
QZL36_RS05950	ruvC	1268445..1268966 (+)	522	WP_005457261.1	crossover junction endodeoxyribonuclease RuvC	-
QZL36_RS05955	-	1269088..1270539 (+)	1452	WP_322533603.1	methyl-accepting chemotaxis protein	-
QZL36_RS05960	ruvA	1270618..1271232 (+)	615	WP_005486097.1	Holliday junction branch migration protein RuvA	-
QZL36_RS05965	ruvB	1271254..1272258 (+)	1005	WP_005457270.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
QZL36_RS05970	cydA	1272719..1274305 (+)	1587	WP_005457265.1	cytochrome ubiquinol oxidase subunit I	-
QZL36_RS05975	cydB	1274323..1275459 (+)	1137	WP_308385217.1	cytochrome d ubiquinol oxidase subunit II	-
QZL36_RS05980	cydX	1275472..1275579 (+)	108	WP_000270284.1	cytochrome bd-I oxidase subunit CydX	-
QZL36_RS05985	ybgE	1275572..1275874 (+)	303	WP_005495828.1	cyd operon protein YbgE	-
QZL36_RS05990	ybgC	1276047..1276466 (+)	420	WP_005483618.1	tol-pal system-associated acyl-CoA thioesterase	-
QZL36_RS05995	tolQ	1276456..1277154 (+)	699	WP_005485405.1	protein TolQ	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 37226.63 Da
• Isoelectric Point: 4.7025

>NTDB_id=781372 QZL36_RS05965 WP_005457270.1 1271254..1272258(+) (ruvB) [Vibrio parahaemolyticus isolate BM18B]
MIEADRLIAPENPAFRDEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRSEALDHLLIFGPPGLGKTTLANIVANE
MEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLI
GATTRAGSLTSPLRDRFGITQRLEYYKVQDLQNIVQRSADCLGLSMEPEGALEVARRARGTPRIANRLLRRVRDYAEVKG
NGHICADVADKALNMLDVDAQGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRTPRGR
IATDRAYLHFGIEK

Nucleotide

• Length: 1005 bp

>NTDB_id=781372 QZL36_RS05965 WP_005457270.1 1271254..1272258(+) (ruvB) [Vibrio parahaemolyticus isolate BM18B]
ATGATTGAAGCCGATCGTTTAATCGCTCCTGAAAATCCAGCGTTTCGTGATGAAGATGTTATTGACCGTGCTATTCGCCC
TAAAAAGTTGGCGGATTACCAAGGTCAGGATCATGTCCGTGATCAGATGGAGATTTTCATCAAAGCGGCACAATTGCGTA
GTGAGGCGTTAGACCACCTACTTATTTTTGGCCCTCCAGGTTTGGGTAAAACGACGTTGGCAAACATTGTTGCTAACGAG
ATGGAAGTGAACATCCGTACTACTTCTGGACCTGTTCTCGAAAAAGCAGGCGATTTGGCCGCGTTGTTGACCAACCTTGA
GGAAAACGACGTGCTTTTCATTGATGAGATCCATCGTCTTAGCCCTATGGTCGAAGAGGTGCTGTATCCGGCAATGGAAG
ATTACCAATTGGACATCATGATTGGTGAAGGCCCGGCCGCACGTTCTATCAAAATTGATTTGCCACCATTCACATTGATT
GGTGCAACGACGCGTGCGGGGTCTTTGACTTCTCCGCTGCGTGACCGTTTTGGTATTACTCAGCGTCTTGAGTACTACAA
AGTGCAAGATCTACAGAACATTGTTCAACGCAGTGCAGATTGTCTAGGGTTGTCGATGGAGCCAGAAGGCGCGTTAGAAG
TTGCTCGACGAGCTCGTGGTACGCCTCGTATTGCAAACCGTCTATTGCGCCGTGTCCGTGACTATGCAGAAGTGAAGGGC
AACGGACATATTTGTGCCGATGTTGCTGACAAAGCGCTTAATATGTTGGATGTGGATGCTCAGGGCTTCGATTACATGGA
CCGCAAGCTTCTTCTCGCTATCATGGAGAAATTTGGTGGTGGTCCAGTTGGACTCGACAATATGGCTGCCGCTATTGGTG
AAGAAAAAGACACCATTGAAGATGTGCTAGAACCATATTTGATTCAGCAAGGCTATTTACAACGCACTCCCCGAGGAAGA
ATCGCCACAGATCGTGCATATCTTCATTTCGGAATTGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (186-259)

• RuvB C-terminal winged helix domain (WHD_RuvB) (261-330)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (25-183)

3D structure

• AlphaFold DB: Q87QU7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.486	98.503	0.596
ruvB	Streptococcus pneumoniae TIGR4	58.824	96.707	0.569
ruvB	Streptococcus pneumoniae R6	58.824	96.707	0.569
ruvB	Streptococcus pneumoniae D39	58.824	96.707	0.569
ruvB	Synechocystis sp. PCC 6803	55.987	92.515	0.518
ruvB	Helicobacter pylori 26695	54.276	91.018	0.494