Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PP263_RS12270 Genome accession   NZ_CP116899
Coordinates   2936441..2936995 (-) Length   184 a.a.
NCBI ID   WP_308363799.1    Uniprot ID   -
Organism   Microbulbifer sp. TB1203     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2931441..2941995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PP263_RS12250 galU 2932330..2933178 (-) 849 WP_308363794.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  PP263_RS12255 fabA 2933415..2933939 (+) 525 WP_308363795.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -
  PP263_RS12260 fabB 2934035..2935258 (+) 1224 WP_308363796.1 beta-ketoacyl-ACP synthase I -
  PP263_RS12265 - 2935597..2936427 (-) 831 WP_308363797.1 sugar nucleotide-binding protein -
  PP263_RS12270 ssb 2936441..2936995 (-) 555 WP_308363799.1 single-stranded DNA-binding protein Machinery gene
  PP263_RS12275 - 2937123..2938286 (-) 1164 WP_308363801.1 MFS transporter -
  PP263_RS12280 - 2938586..2939992 (-) 1407 WP_308363803.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20045.83 Da        Isoelectric Point: 4.9746

>NTDB_id=780991 PP263_RS12270 WP_308363799.1 2936441..2936995(-) (ssb) [Microbulbifer sp. TB1203]
MARGINKVILIGNLGADPETRYMPSGGAVTNVNLATSETWKDKQTGQQQERTEWHRVVFFNRLAEIAGEYLRKGSKVYIE
GSLRTRKWQDKNSGQDRYTTEIVASEMQMLDSRGDQGGYSQGGGGYDQGYQPQGGQSDPYGPGNQGRSAPSSMAPSQPSS
QQPPSQQAPASGGFDNSFDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=780991 PP263_RS12270 WP_308363799.1 2936441..2936995(-) (ssb) [Microbulbifer sp. TB1203]
ATGGCCAGGGGTATCAACAAAGTCATTCTGATTGGCAATCTGGGCGCAGACCCGGAAACCCGCTACATGCCCAGCGGCGG
CGCAGTGACCAATGTGAATCTGGCGACGTCCGAGACCTGGAAGGACAAGCAGACCGGCCAGCAGCAGGAACGCACCGAGT
GGCACCGGGTGGTGTTCTTCAACCGCCTGGCGGAGATCGCCGGCGAATACCTGCGCAAGGGCAGCAAAGTGTACATCGAG
GGCTCGTTGCGTACCCGCAAGTGGCAGGACAAGAACTCCGGCCAGGACCGCTACACCACAGAAATCGTCGCCAGCGAAAT
GCAGATGCTGGACAGCCGCGGGGACCAGGGTGGCTATTCCCAGGGCGGCGGCGGATACGACCAGGGCTACCAGCCGCAGG
GCGGCCAGTCCGACCCCTATGGTCCTGGCAACCAGGGCCGCTCCGCACCTTCCTCCATGGCGCCGTCCCAGCCATCAAGC
CAGCAGCCGCCGAGCCAGCAGGCGCCGGCGAGCGGTGGCTTCGACAACAGTTTCGACGACGACATTCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.124

100

0.571
  ssb Glaesserella parasuis strain SC1401

53.368

100

0.56
  ssb Neisseria meningitidis MC58

48.634

99.457

0.484
  ssb Neisseria gonorrhoeae MS11

48.634

99.457

0.484