Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QY075_RS11130 Genome accession   NZ_CP129688
Coordinates   2341550..2342608 (-) Length   352 a.a.
NCBI ID   WP_003086123.1    Uniprot ID   Q02IC9
Organism   Pseudomonas aeruginosa strain PA2818     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2336550..2347608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY075_RS11100 pal 2336991..2337497 (-) 507 WP_003111417.1 peptidoglycan-associated lipoprotein Pal -
  QY075_RS11105 tolB 2337550..2338848 (-) 1299 WP_003086128.1 Tol-Pal system beta propeller repeat protein TolB -
  QY075_RS11110 tolA 2338845..2339888 (-) 1044 WP_003086127.1 cell envelope integrity protein TolA -
  QY075_RS11115 tolR 2339891..2340331 (-) 441 WP_003086126.1 protein TolR -
  QY075_RS11120 tolQ 2340354..2341049 (-) 696 WP_003086125.1 protein TolQ -
  QY075_RS11125 ybgC 2341051..2341497 (-) 447 WP_003086124.1 tol-pal system-associated acyl-CoA thioesterase -
  QY075_RS11130 ruvB 2341550..2342608 (-) 1059 WP_003086123.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QY075_RS11135 ruvA 2342619..2343224 (-) 606 WP_003086122.1 Holliday junction branch migration protein RuvA -
  QY075_RS11140 ruvC 2343241..2343765 (-) 525 WP_003112575.1 crossover junction endodeoxyribonuclease RuvC -
  QY075_RS11145 - 2343850..2344596 (-) 747 WP_003086107.1 YebC/PmpR family DNA-binding transcriptional regulator -
  QY075_RS11150 aspS 2344663..2346438 (-) 1776 WP_003123218.1 aspartate--tRNA ligase -
  QY075_RS11155 - 2346878..2347348 (+) 471 WP_003086103.1 Dps family protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38932.67 Da        Isoelectric Point: 5.1792

>NTDB_id=780868 QY075_RS11130 WP_003086123.1 2341550..2342608(-) (ruvB) [Pseudomonas aeruginosa strain PA2818]
MIEPDRLISAVSGRERDEQLDRAIRPLKLADYIGQPSVREQMELFIHAARGRQEALDHTLIFGPPGLGKTTLANIIAQEM
GVSIKSTSGPVLERPGDLAALLTNLEAGDVLFVDEIHRLSPIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVG
ATTRAGMLTNPLRDRFGIVQRLEFYNVEDLATIVSRSAGILGLEIEPQGAAEIAKRARGTPRIANRLLRRVRDFAEVRGQ
GDITRVIADKALNLLDVDERGFDHLDRRLLLTMIDKFDGGPVGIDNLAAALSEERHTIEDVLEPYLIQQGYIMRTPRGRV
VTRHAYLHFGLNIPKRLGPGVTTDLFTSEDGN

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=780868 QY075_RS11130 WP_003086123.1 2341550..2342608(-) (ruvB) [Pseudomonas aeruginosa strain PA2818]
ATGATCGAGCCTGATCGCCTCATATCCGCCGTTTCCGGTCGCGAACGCGATGAGCAGCTGGACCGCGCCATTCGCCCGCT
GAAGCTGGCCGACTACATCGGCCAGCCCAGCGTGCGCGAGCAGATGGAGCTGTTCATCCATGCCGCGCGCGGCCGCCAGG
AGGCGCTCGACCATACGCTGATCTTCGGTCCGCCGGGGCTGGGCAAGACGACCCTGGCGAATATCATCGCCCAGGAAATG
GGCGTTTCCATCAAGAGTACTTCCGGGCCGGTGCTCGAGCGTCCCGGCGATCTCGCCGCGTTGCTGACCAACCTGGAGGC
CGGCGACGTCCTGTTCGTCGACGAGATCCACCGTCTTTCGCCCATCGTCGAAGAAGTGCTGTATCCGGCCATGGAAGATT
TCCAGTTGGACATCATGATCGGCGAAGGGCCCGCGGCCCGCTCCATCAAGCTGGACCTGCCGCCGTTCACCCTGGTCGGC
GCGACCACTCGTGCCGGCATGCTGACCAATCCACTGCGCGATCGCTTCGGTATCGTCCAGCGCCTGGAGTTCTACAACGT
CGAGGACCTGGCGACCATCGTCAGTCGGTCGGCCGGCATTCTCGGCCTGGAGATCGAGCCGCAGGGCGCGGCGGAAATCG
CCAAGCGCGCCCGCGGTACGCCGCGAATCGCCAATCGCCTGCTGCGCCGGGTACGCGACTTCGCCGAGGTCCGGGGGCAG
GGCGACATTACCCGGGTGATCGCCGACAAGGCATTGAACCTGCTCGATGTCGACGAGCGTGGCTTTGACCACCTCGACCG
TCGTCTGTTGCTGACCATGATCGACAAGTTCGATGGCGGGCCTGTAGGAATCGACAACTTGGCTGCGGCGTTGAGCGAGG
AGCGGCACACGATCGAAGATGTACTGGAGCCCTATCTGATCCAGCAGGGCTACATCATGCGGACACCGCGGGGACGCGTG
GTAACACGCCATGCGTACCTGCACTTTGGCCTGAATATTCCGAAAAGGTTGGGGCCGGGGGTGACGACGGATCTGTTCAC
GTCTGAAGATGGTAATTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-329)

RuvB AAA lid domain (AAA_lid_4)

(185-258)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(24-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02IC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

61.027

94.034

0.574
  ruvB Streptococcus pneumoniae TIGR4

59.062

90.909

0.537
  ruvB Streptococcus pneumoniae R6

58.75

90.909

0.534
  ruvB Streptococcus pneumoniae D39

58.75

90.909

0.534
  ruvB Synechocystis sp. PCC 6803

57.143

91.477

0.523
  ruvB Helicobacter pylori 26695

55.449

88.636

0.491