Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QY069_RS17735 Genome accession   NZ_CP129687
Coordinates   3685533..3686030 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain PA2209     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3680533..3691030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY069_RS17720 bfr 3680542..3681006 (+) 465 WP_003093668.1 bacterioferritin -
  QY069_RS17725 uvrA 3681077..3683914 (-) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  QY069_RS17730 - 3684128..3685516 (+) 1389 WP_003103910.1 MFS transporter -
  QY069_RS17735 ssb 3685533..3686030 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  QY069_RS17740 pchA 3686119..3687549 (-) 1431 WP_003118152.1 isochorismate synthase PchA -
  QY069_RS17745 pchB 3687546..3687851 (-) 306 WP_010793476.1 isochorismate lyase PchB -
  QY069_RS17750 pchC 3687851..3688606 (-) 756 WP_010793475.1 pyochelin biosynthesis editing thioesterase PchC -
  QY069_RS17755 pchD 3688603..3690246 (-) 1644 WP_003118945.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=780816 QY069_RS17735 WP_003114685.1 3685533..3686030(+) (ssb) [Pseudomonas aeruginosa strain PA2209]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=780816 QY069_RS17735 WP_003114685.1 3685533..3686030(+) (ssb) [Pseudomonas aeruginosa strain PA2209]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGATGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515