Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PPM45_RS20415 Genome accession   NZ_CP116870
Coordinates   3965133..3965651 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis subsp. subtilis strain Master_strain     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3960133..3970651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM45_RS20385 yyaJ 3960636..3961991 (+) 1356 WP_003243011.1 MFS transporter -
  PPM45_RS20390 maa 3962025..3962579 (-) 555 WP_003242928.1 sugar O-acetyltransferase -
  PPM45_RS20395 yyaH 3962597..3962977 (-) 381 WP_003244460.1 VOC family protein -
  PPM45_RS20400 ccpB 3963033..3963968 (-) 936 WP_003243573.1 transcriptional regulator CcpB -
  PPM45_RS20405 xth 3964027..3964785 (-) 759 WP_003243194.1 exodeoxyribonuclease III -
  PPM45_RS20410 rpsR 3964850..3965089 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  PPM45_RS20415 ssbA 3965133..3965651 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  PPM45_RS20420 rpsF 3965692..3965979 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  PPM45_RS20425 ychF 3966090..3967190 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  PPM45_RS20430 yyaE 3967317..3969320 (-) 2004 WP_003244290.1 molybdopterin-dependent oxidoreductase -
  PPM45_RS20435 yyzM 3969371..3969577 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=780755 PPM45_RS20415 WP_003219228.1 3965133..3965651(-) (ssbA) [Bacillus subtilis subsp. subtilis strain Master_strain]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=780755 PPM45_RS20415 WP_003219228.1 3965133..3965651(-) (ssbA) [Bacillus subtilis subsp. subtilis strain Master_strain]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378