Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QY067_RS27620 Genome accession   NZ_CP129685
Coordinates   5778566..5779063 (-) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain PA2500     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5773566..5784063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY067_RS27600 pchD 5774350..5775993 (+) 1644 WP_003093650.1 pyochelin biosynthesis salicyl-AMP ligase PchD -
  QY067_RS27605 pchC 5775990..5776745 (+) 756 WP_003093651.1 pyochelin biosynthesis editing thioesterase PchC -
  QY067_RS27610 pchB 5776745..5777050 (+) 306 WP_003106950.1 isochorismate lyase PchB -
  QY067_RS27615 pchA 5777047..5778477 (+) 1431 WP_003093658.1 isochorismate synthase PchA -
  QY067_RS27620 ssb 5778566..5779063 (-) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  QY067_RS27625 - 5779080..5780468 (-) 1389 WP_003103910.1 MFS transporter -
  QY067_RS27630 uvrA 5780682..5783519 (+) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  QY067_RS27635 bfr 5783591..5784055 (-) 465 WP_003093668.1 bacterioferritin -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=780719 QY067_RS27620 WP_003114685.1 5778566..5779063(-) (ssb) [Pseudomonas aeruginosa strain PA2500]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=780719 QY067_RS27620 WP_003114685.1 5778566..5779063(-) (ssb) [Pseudomonas aeruginosa strain PA2500]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGATGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAACAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515