Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PPM34_RS19740 Genome accession   NZ_CP116869
Coordinates   3836982..3837500 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis subsp. subtilis strain MGP001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3831982..3842500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM34_RS19710 yyaJ 3832485..3833840 (+) 1356 WP_003243011.1 MFS transporter -
  PPM34_RS19715 maa 3833874..3834428 (-) 555 WP_003242928.1 sugar O-acetyltransferase -
  PPM34_RS19720 yyaH 3834446..3834826 (-) 381 WP_003244460.1 VOC family protein -
  PPM34_RS19725 ccpB 3834882..3835817 (-) 936 WP_003243573.1 transcriptional regulator CcpB -
  PPM34_RS19730 xth 3835876..3836634 (-) 759 WP_003243194.1 exodeoxyribonuclease III -
  PPM34_RS19735 rpsR 3836699..3836938 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  PPM34_RS19740 ssbA 3836982..3837500 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  PPM34_RS19745 rpsF 3837541..3837828 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  PPM34_RS19750 ychF 3837939..3839039 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  PPM34_RS19755 yyaE 3839166..3841169 (-) 2004 WP_003244290.1 molybdopterin-dependent oxidoreductase -
  PPM34_RS19760 yyzM 3841220..3841426 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=780670 PPM34_RS19740 WP_003219228.1 3836982..3837500(-) (ssbA) [Bacillus subtilis subsp. subtilis strain MGP001]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=780670 PPM34_RS19740 WP_003219228.1 3836982..3837500(-) (ssbA) [Bacillus subtilis subsp. subtilis strain MGP001]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378