Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PPM30_RS19570 Genome accession   NZ_CP116868
Coordinates   3748439..3748957 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis subsp. subtilis strain MGP003     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3743439..3753957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM30_RS19540 yyaJ 3743942..3745297 (+) 1356 WP_003243011.1 MFS transporter -
  PPM30_RS19545 maa 3745331..3745885 (-) 555 WP_003242928.1 sugar O-acetyltransferase -
  PPM30_RS19550 yyaH 3745903..3746283 (-) 381 WP_003244460.1 VOC family protein -
  PPM30_RS19555 ccpB 3746339..3747274 (-) 936 WP_003243573.1 transcriptional regulator CcpB -
  PPM30_RS19560 xth 3747333..3748091 (-) 759 WP_003243194.1 exodeoxyribonuclease III -
  PPM30_RS19565 rpsR 3748156..3748395 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  PPM30_RS19570 ssbA 3748439..3748957 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  PPM30_RS19575 rpsF 3748998..3749285 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  PPM30_RS19580 ychF 3749396..3750496 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  PPM30_RS19585 yyaE 3750623..3752626 (-) 2004 WP_003244290.1 molybdopterin-dependent oxidoreductase -
  PPM30_RS19590 yyzM 3752677..3752883 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=780586 PPM30_RS19570 WP_003219228.1 3748439..3748957(-) (ssbA) [Bacillus subtilis subsp. subtilis strain MGP003]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=780586 PPM30_RS19570 WP_003219228.1 3748439..3748957(-) (ssbA) [Bacillus subtilis subsp. subtilis strain MGP003]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378