Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PPM66_RS19190 Genome accession   NZ_CP116867
Coordinates   3667559..3668077 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis subsp. subtilis strain MGP008     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3662559..3673077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM66_RS19160 yyaJ 3663062..3664417 (+) 1356 WP_003243011.1 MFS transporter -
  PPM66_RS19165 maa 3664451..3665005 (-) 555 WP_003242928.1 sugar O-acetyltransferase -
  PPM66_RS19170 yyaH 3665023..3665403 (-) 381 WP_003244460.1 VOC family protein -
  PPM66_RS19175 ccpB 3665459..3666394 (-) 936 WP_003243573.1 transcriptional regulator CcpB -
  PPM66_RS19180 xth 3666453..3667211 (-) 759 WP_003243194.1 exodeoxyribonuclease III -
  PPM66_RS19185 rpsR 3667276..3667515 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  PPM66_RS19190 ssbA 3667559..3668077 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  PPM66_RS19195 rpsF 3668118..3668405 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  PPM66_RS19200 ychF 3668516..3669616 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  PPM66_RS19205 yyaE 3669743..3671746 (-) 2004 WP_003244290.1 molybdopterin-dependent oxidoreductase -
  PPM66_RS19210 yyzM 3671797..3672003 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=780502 PPM66_RS19190 WP_003219228.1 3667559..3668077(-) (ssbA) [Bacillus subtilis subsp. subtilis strain MGP008]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=780502 PPM66_RS19190 WP_003219228.1 3667559..3668077(-) (ssbA) [Bacillus subtilis subsp. subtilis strain MGP008]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378