Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   QYT31_RS02950 Genome accession   NZ_CP129558
Coordinates   603563..604249 (-) Length   228 a.a.
NCBI ID   WP_000692886.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 670M     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 598563..609249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYT31_RS02905 (QYT31_02895) rpmA 599277..599561 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  QYT31_RS02910 (QYT31_02900) - 599573..599893 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  QYT31_RS02915 (QYT31_02905) rplU 599899..600207 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  QYT31_RS02920 (QYT31_02910) mreD 600500..601030 (-) 531 WP_001259924.1 rod shape-determining protein MreD -
  QYT31_RS02925 (QYT31_02915) mreC 601030..601872 (-) 843 WP_000911040.1 rod shape-determining protein MreC -
  QYT31_RS02930 (QYT31_02920) - 602071..602190 (-) 120 WP_000840602.1 hypothetical protein -
  QYT31_RS02935 (QYT31_02925) - 602264..602737 (-) 474 WP_001236734.1 DUF4930 family protein -
  QYT31_RS02940 (QYT31_02930) - 602897..603094 (+) 198 WP_000025835.1 hypothetical protein -
  QYT31_RS02945 (QYT31_02935) - 603211..603495 (-) 285 WP_000171853.1 hypothetical protein -
  QYT31_RS02950 (QYT31_02940) ysxA/radC 603563..604249 (-) 687 WP_000692886.1 RadC family protein Machinery gene
  QYT31_RS02955 (QYT31_02945) - 604246..604953 (-) 708 WP_001814477.1 prepilin peptidase -
  QYT31_RS02960 (QYT31_02950) - 605223..606494 (-) 1272 WP_001108346.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  QYT31_RS02965 (QYT31_02955) - 606507..609137 (-) 2631 WP_000425353.1 valine--tRNA ligase -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25311.24 Da        Isoelectric Point: 6.7572

>NTDB_id=780304 QYT31_RS02950 WP_000692886.1 603563..604249(-) (ysxA/radC) [Staphylococcus aureus strain 670M]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide


Download         Length: 687 bp        

>NTDB_id=780304 QYT31_RS02950 WP_000692886.1 603563..604249(-) (ysxA/radC) [Staphylococcus aureus strain 670M]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACTGGAAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACTTTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-222)

UPF0758 N-terminal (UPF0758_N)

(3-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

52.679

98.246

0.518
  radC Streptococcus pneumoniae TIGR4

41.038

92.982

0.382
  radC Streptococcus gordonii str. Challis substr. CH1

39.908

95.614

0.382
  radC Streptococcus pneumoniae R6

40.566

92.982

0.377
  radC Streptococcus pneumoniae D39

40.566

92.982

0.377