Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PNF30_RS00095 Genome accession   NZ_CP116774
Coordinates   17441..17983 (+) Length   180 a.a.
NCBI ID   WP_007497456.1    Uniprot ID   A0A5K1N7D0
Organism   Bacillus safensis strain SRCM125915     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 12441..22983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF30_RS00070 (PNF30_00070) - 13445..13855 (-) 411 WP_034283636.1 hypothetical protein -
  PNF30_RS00075 (PNF30_00075) - 13871..15190 (-) 1320 WP_205183581.1 hydrolase -
  PNF30_RS00080 (PNF30_00080) - 15485..15691 (+) 207 WP_008347561.1 DUF951 domain-containing protein -
  PNF30_RS00085 (PNF30_00085) ychF 15908..17008 (+) 1101 WP_048238325.1 redox-regulated ATPase YchF -
  PNF30_RS00090 (PNF30_00090) rpsF 17117..17404 (+) 288 WP_024424058.1 30S ribosomal protein S6 -
  PNF30_RS00095 (PNF30_00095) ssbA 17441..17983 (+) 543 WP_007497456.1 single-stranded DNA-binding protein SsbA Machinery gene
  PNF30_RS00100 (PNF30_00100) rpsR 18024..18263 (+) 240 WP_008347556.1 30S ribosomal protein S18 -
  PNF30_RS00105 (PNF30_00105) - 18466..19431 (+) 966 WP_272510561.1 ABC transporter ATP-binding protein -
  PNF30_RS00110 (PNF30_00110) opuFB 19424..20941 (+) 1518 WP_272510562.1 osmoprotectant update ABC transporter permease/substrate-binding subunit OpuFB -
  PNF30_RS00115 (PNF30_00115) - 21153..22103 (+) 951 WP_095410035.1 ring-cleaving dioxygenase -
  PNF30_RS00120 (PNF30_00120) - 22100..22708 (+) 609 WP_095410034.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19605.15 Da        Isoelectric Point: 4.6109

>NTDB_id=780151 PNF30_RS00095 WP_007497456.1 17441..17983(+) (ssbA) [Bacillus safensis strain SRCM125915]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPSQNPYGNQNNQNRNQGNSFN
DDPFANDGKPIDISDDDLPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=780151 PNF30_RS00095 WP_007497456.1 17441..17983(+) (ssbA) [Bacillus safensis strain SRCM125915]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGTTTGCAGACAAGA
AACTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAGAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGTAGCCAAAACGATCAGA
ACCCATTTGGAAATGAACCAAGTCAAAATCCATATGGCAATCAAAACAACCAAAATCGTAATCAGGGAAATAGCTTCAAT
GATGACCCATTTGCGAACGATGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1N7D0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

85.556

100

0.856
  ssb Latilactobacillus sakei subsp. sakei 23K

55.376

100

0.572
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.889

0.378
  ssb Glaesserella parasuis strain SC1401

35.714

100

0.361