Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PNF29_RS00095 Genome accession   NZ_CP116773
Coordinates   17735..18253 (+) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain SRCM125727     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 12735..23253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF29_RS00075 (PNF29_00075) yyzM 13809..14015 (+) 207 WP_003226838.1 DUF951 domain-containing protein -
  PNF29_RS00080 (PNF29_00080) yyaE 14066..16069 (+) 2004 WP_014481509.1 molybdopterin-dependent oxidoreductase -
  PNF29_RS00085 (PNF29_00085) ychF 16196..17296 (+) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  PNF29_RS00090 (PNF29_00090) rpsF 17407..17694 (+) 288 WP_003244064.1 30S ribosomal protein S6 -
  PNF29_RS00095 (PNF29_00095) ssbA 17735..18253 (+) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  PNF29_RS00100 (PNF29_00100) rpsR 18297..18536 (+) 240 WP_003219224.1 30S ribosomal protein S18 -
  PNF29_RS00105 (PNF29_00105) xth 18599..19357 (+) 759 WP_041336712.1 exodeoxyribonuclease III -
  PNF29_RS00110 (PNF29_00110) ccpB 19417..20352 (+) 936 WP_017695815.1 transcriptional regulator CcpB -
  PNF29_RS00115 (PNF29_00115) yyaH 20408..20788 (+) 381 WP_015250784.1 VOC family protein -
  PNF29_RS00120 (PNF29_00120) maa 20804..21358 (+) 555 WP_041336710.1 sugar O-acetyltransferase -
  PNF29_RS00125 (PNF29_00125) yyaJ 21392..22747 (-) 1356 WP_041337895.1 MFS transporter -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=780075 PNF29_RS00095 WP_003219228.1 17735..18253(+) (ssbA) [Bacillus subtilis strain SRCM125727]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=780075 PNF29_RS00095 WP_003219228.1 17735..18253(+) (ssbA) [Bacillus subtilis strain SRCM125727]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378