Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   PJU73_RS07040 Genome accession   NZ_CP116766
Coordinates   1537201..1537488 (-) Length   95 a.a.
NCBI ID   WP_237091492.1    Uniprot ID   -
Organism   Neisseria lisongii strain ZJ106     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1532201..1542488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJU73_RS07025 (PJU73_07025) - 1534004..1534525 (+) 522 WP_237091832.1 MliC family protein -
  PJU73_RS07030 (PJU73_07030) xerC 1534785..1535696 (-) 912 WP_237091833.1 tyrosine recombinase XerC -
  PJU73_RS07035 (PJU73_07035) fba 1535933..1536997 (+) 1065 WP_237091834.1 class II fructose-bisphosphate aldolase -
  PJU73_RS07040 (PJU73_07040) comE 1537201..1537488 (-) 288 WP_237091492.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9735.54 Da        Isoelectric Point: 10.6985

>NTDB_id=780004 PJU73_RS07040 WP_237091492.1 1537201..1537488(-) (comE) [Neisseria lisongii strain ZJ106]
MKKLLTAAALMLATAFAAAAVNINTASETELTALPGIGPAKAKAIVEYRKLNGAFKSPEELKNVKGIGEGIFSKLKGEAV
TSTPPAKKAGPALKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=780004 PJU73_RS07040 WP_237091492.1 1537201..1537488(-) (comE) [Neisseria lisongii strain ZJ106]
ATGAAAAAACTGCTTACCGCAGCCGCACTGATGCTTGCCACCGCATTTGCCGCCGCAGCCGTCAACATCAACACCGCTTC
CGAAACCGAACTGACTGCCTTACCCGGCATCGGCCCGGCCAAAGCAAAAGCCATTGTAGAGTACCGCAAACTTAACGGTG
CGTTCAAATCCCCCGAGGAGCTGAAAAACGTCAAAGGCATCGGGGAGGGCATCTTCTCGAAACTGAAAGGGGAGGCCGTT
ACTTCCACCCCGCCTGCTAAAAAGGCCGGCCCTGCTTTGAAAAAGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

55.556

100

0.579
  comE Neisseria gonorrhoeae MS11

55.556

100

0.579
  comE Neisseria gonorrhoeae MS11

55.556

100

0.579
  comE Neisseria gonorrhoeae MS11

55.556

100

0.579
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.962

83.158

0.474
  comEA Vibrio campbellii strain DS40M4

40.909

92.632

0.379