Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   QY866_RS09835 Genome accession   NZ_CP129530
Coordinates   1929762..1930373 (-) Length   203 a.a.
NCBI ID   WP_011374075.1    Uniprot ID   Q38YR0
Organism   Latilactobacillus sakei strain A1262     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1924762..1935373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY866_RS09815 (QY866_09805) arcA 1925706..1926941 (-) 1236 WP_056947797.1 arginine deiminase -
  QY866_RS09820 (QY866_09810) - 1927147..1927668 (-) 522 WP_056947794.1 GNAT family protein -
  QY866_RS09825 (QY866_09815) queA 1927695..1928726 (-) 1032 WP_011374077.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  QY866_RS09830 (QY866_09820) ruvB 1928748..1929749 (-) 1002 Protein_1876 Holliday junction branch migration DNA helicase RuvB -
  QY866_RS09835 (QY866_09825) ruvA 1929762..1930373 (-) 612 WP_011374075.1 Holliday junction branch migration protein RuvA Machinery gene
  QY866_RS09840 (QY866_09830) - 1930784..1931347 (-) 564 Protein_1878 TIGR00730 family Rossman fold protein -
  QY866_RS09845 (QY866_09835) - 1931360..1931905 (-) 546 WP_056947792.1 Maf family protein -
  QY866_RS09850 (QY866_09840) hexB 1931905..1933866 (-) 1962 WP_056947790.1 DNA mismatch repair endonuclease MutL Machinery gene

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22143.35 Da        Isoelectric Point: 4.8129

>NTDB_id=779922 QY866_RS09835 WP_011374075.1 1929762..1930373(-) (ruvA) [Latilactobacillus sakei strain A1262]
MYEYLKGLVTAVNPYYVVLEVQGIGYQLQVANPYRYTESMSEVVQIFVHQAVRDTDITLFGFYDLDEKQLFQKLISVSGI
GPKSALAILANSDHSGLIQAIMNDDIGYLTKFPGVGKKTAQQIALDLKGKLGDLEQSATLVGQTAIDLGSQGDSPELSDA
LAALSALGYSAREVKAITPKLTDFAAQTTDQYLREGLRLLMKK

Nucleotide


Download         Length: 612 bp        

>NTDB_id=779922 QY866_RS09835 WP_011374075.1 1929762..1930373(-) (ruvA) [Latilactobacillus sakei strain A1262]
ATGTATGAATATTTAAAGGGTTTAGTGACGGCGGTTAATCCGTATTACGTTGTTTTGGAAGTCCAAGGAATTGGCTATCA
ATTACAAGTTGCCAACCCATATCGGTATACGGAATCGATGAGCGAAGTGGTTCAAATTTTTGTCCACCAAGCGGTACGCG
ATACTGATATTACGCTTTTTGGCTTTTACGACTTAGATGAAAAACAACTTTTCCAAAAATTAATCAGTGTTTCCGGAATT
GGTCCCAAGAGTGCCTTGGCAATTTTGGCTAACAGTGATCATTCTGGCTTAATTCAGGCGATTATGAACGATGATATTGG
GTACTTAACGAAGTTCCCAGGCGTTGGGAAGAAGACGGCCCAACAGATTGCCTTAGATCTTAAAGGTAAGTTAGGTGATC
TAGAACAAAGCGCAACGTTAGTCGGCCAAACGGCAATTGATTTAGGCAGCCAAGGCGATTCACCTGAATTAAGTGATGCA
CTAGCGGCCTTGAGTGCGCTTGGTTATTCCGCACGGGAAGTCAAAGCGATTACGCCTAAGTTAACTGATTTTGCAGCGCA
AACAACTGATCAATATCTCAGAGAAGGTTTGCGGTTATTGATGAAGAAATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(157-201)

Helix-hairpin-helix domain (HHH_5)

(71-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38YR0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

48.293

100

0.488
  ruvA Streptococcus pneumoniae R6

48.293

100

0.488
  ruvA Streptococcus pneumoniae D39

48.293

100

0.488
  ruvA Bacillus subtilis subsp. subtilis str. 168

46.078

100

0.463