Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexB   Type   Machinery gene
Locus tag   QY866_RS09850 Genome accession   NZ_CP129530
Coordinates   1931905..1933866 (-) Length   653 a.a.
NCBI ID   WP_056947790.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain A1262     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1926905..1938866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY866_RS09820 (QY866_09810) - 1927147..1927668 (-) 522 WP_056947794.1 GNAT family protein -
  QY866_RS09825 (QY866_09815) queA 1927695..1928726 (-) 1032 WP_011374077.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  QY866_RS09830 (QY866_09820) ruvB 1928748..1929749 (-) 1002 Protein_1876 Holliday junction branch migration DNA helicase RuvB -
  QY866_RS09835 (QY866_09825) ruvA 1929762..1930373 (-) 612 WP_011374075.1 Holliday junction branch migration protein RuvA Machinery gene
  QY866_RS09840 (QY866_09830) - 1930784..1931347 (-) 564 Protein_1878 TIGR00730 family Rossman fold protein -
  QY866_RS09845 (QY866_09835) - 1931360..1931905 (-) 546 WP_056947792.1 Maf family protein -
  QY866_RS09850 (QY866_09840) hexB 1931905..1933866 (-) 1962 WP_056947790.1 DNA mismatch repair endonuclease MutL Machinery gene
  QY866_RS09855 (QY866_09845) hexA 1933890..1936493 (-) 2604 WP_056947789.1 DNA mismatch repair protein MutS Machinery gene
  QY866_RS09860 (QY866_09850) - 1936515..1937321 (-) 807 WP_011374070.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 72727.22 Da        Isoelectric Point: 5.4265

>NTDB_id=779923 QY866_RS09850 WP_056947790.1 1931905..1933866(-) (hexB) [Latilactobacillus sakei strain A1262]
MGKIHELSEILSNQIAAGEVIERPASVVKELVENAIDANSTQVDIVVEQAGLQMIQVIDNGDGIEPEDVPVAFKRHATSK
IATRQDLFKIQSLGFRGEALASIASVSDLTIETATADSLGTFAHFKGGLLEEQKTNPIRPGTAITVRDLFFNTPARLKYV
KTFQTELANIVDIVNRLAMSHPQIAFTLTNDDHLLLKTAGNNDLKQTIAGIYGVTMAKKLLAVSASDLDFKLTGYVSLPE
LTRATRNYLSILINGRFIKNYQLNKAIIKGYGSKLMVGRYPIAVLAIEMDPLLIDVNVHPTKQEVRLSKETALMTLIEGA
IKERLATENLIPDAMQNLKRTKTVDVDQLQMNLNQITQERRHPSGTVRPVSPMPIPTVKPAIPEIAETETPLAAPTAKAP
AMTPERPLFEQPQALAEWDQKYATEAVGKPFGDQVVDETDESDETVVEPTVRFPELRYIGQLHSTFLLAEGEDGFYILDQ
HAAQERIKYEYYREKIGEVSTSVQNLLVPLVLEYPNSDALKIQEKTELLAAVGIQLENFGQNSFVVHSHPTWIEQGQEEM
TIRGMIDDVLKDGRISIAQFREKTAIMMSCKQSIKAHHHLDDAQAKALLADLAKTENPFNCPHGRPVLIHYTQKDLEKMF
KRIQEPHHSWEGE

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=779923 QY866_RS09850 WP_056947790.1 1931905..1933866(-) (hexB) [Latilactobacillus sakei strain A1262]
ATGGGGAAAATTCATGAACTGTCGGAAATTCTGAGTAATCAAATTGCGGCGGGGGAAGTGATTGAACGCCCCGCCTCAGT
GGTCAAGGAATTGGTTGAAAACGCGATTGATGCTAATAGTACGCAAGTCGATATTGTTGTTGAACAGGCCGGTTTACAGA
TGATTCAAGTGATCGATAACGGTGACGGGATTGAACCAGAAGATGTGCCAGTCGCCTTTAAGCGGCATGCCACCAGTAAG
ATTGCGACTCGGCAAGATTTGTTCAAGATTCAATCGCTAGGGTTTCGGGGTGAAGCGTTAGCTAGTATCGCGTCCGTTTC
CGATTTAACGATTGAAACGGCAACTGCGGACTCTCTAGGAACCTTTGCTCATTTTAAGGGTGGTCTGTTAGAGGAACAAA
AAACAAATCCGATTCGACCGGGGACGGCGATTACGGTGCGGGATTTATTCTTTAATACACCGGCACGATTGAAATACGTG
AAGACTTTTCAAACCGAATTGGCGAATATCGTCGATATCGTCAATCGGCTAGCAATGAGTCATCCACAGATTGCCTTTAC
GCTAACCAATGATGACCATCTACTTTTAAAAACGGCCGGCAACAATGATTTAAAACAAACGATTGCCGGTATTTATGGCG
TCACCATGGCCAAGAAACTCTTAGCCGTGAGTGCTTCGGATTTAGATTTTAAACTAACGGGCTACGTGTCATTGCCGGAA
TTAACGCGGGCAACGCGCAATTATTTGTCGATTTTAATTAATGGTCGGTTTATTAAAAATTACCAATTGAATAAGGCCAT
TATCAAGGGCTACGGTTCTAAATTGATGGTCGGACGCTATCCAATCGCCGTCTTAGCGATTGAGATGGATCCGCTATTGA
TCGATGTCAACGTGCATCCAACAAAACAGGAAGTCCGCTTAAGCAAAGAAACTGCCTTGATGACCTTGATTGAAGGGGCA
ATCAAAGAAAGACTGGCAACCGAGAATTTAATTCCAGATGCCATGCAGAATTTGAAACGGACCAAGACGGTAGATGTTGA
TCAGCTCCAGATGAATTTAAACCAAATTACACAAGAACGACGGCACCCAAGCGGTACGGTGCGACCAGTCAGTCCAATGC
CAATCCCAACGGTCAAACCGGCGATACCCGAAATTGCGGAAACTGAAACGCCGTTAGCCGCACCAACTGCTAAAGCGCCG
GCGATGACACCGGAGCGGCCCTTATTTGAGCAACCCCAGGCATTGGCCGAGTGGGATCAGAAGTACGCGACAGAGGCGGT
TGGGAAGCCGTTTGGTGATCAAGTGGTAGACGAAACGGACGAAAGCGATGAAACCGTAGTCGAACCCACTGTTCGTTTCC
CAGAGTTACGCTACATTGGGCAACTGCATAGTACTTTCTTATTAGCGGAAGGCGAAGATGGCTTTTATATCTTGGATCAA
CACGCTGCGCAAGAACGGATTAAGTACGAGTATTACCGAGAAAAAATTGGGGAAGTCAGCACCTCTGTGCAAAACTTGTT
AGTACCGCTTGTTTTGGAATATCCGAATAGTGATGCGCTAAAGATTCAGGAAAAAACTGAACTCTTGGCGGCAGTCGGAA
TTCAATTAGAAAATTTCGGGCAGAATAGTTTTGTGGTCCACAGTCACCCAACTTGGATTGAACAGGGACAAGAGGAAATG
ACGATTCGTGGGATGATTGACGATGTTTTAAAAGACGGTCGCATTAGCATTGCCCAATTCCGTGAGAAGACGGCGATTAT
GATGAGCTGTAAGCAATCGATTAAAGCGCACCATCATTTAGATGATGCCCAGGCCAAAGCGCTTCTGGCTGATCTAGCGA
AGACTGAGAATCCGTTTAATTGTCCCCATGGGCGCCCGGTTTTGATTCACTACACGCAAAAAGATTTGGAAAAGATGTTT
AAACGGATTCAAGAACCACATCATAGTTGGGAGGGCGAATAA

Domains

Predicted by InterProScan.

MutL C terminal dimerisation domain (MutL_C)

(456-600)

DNA mismatch repair protein, C-terminal domain (DNA_mis_repair)

(208-325)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c_3)

(25-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexB Streptococcus pneumoniae R6

49.848

100

0.504