Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G7Y73_RS02715 Genome accession   NZ_AP022373
Coordinates   626528..627049 (+) Length   173 a.a.
NCBI ID   WP_004260894.1    Uniprot ID   -
Organism   Providencia rettgeri strain BML2531     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 621528..632049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7Y73_RS02705 (BML2531_05390) - 621600..622796 (+) 1197 WP_036958319.1 amino acid aminotransferase -
  G7Y73_RS02710 (BML2531_05400) uvrA 622877..625711 (-) 2835 WP_004260897.1 excinuclease ABC subunit UvrA -
  G7Y73_RS02715 (BML2531_05410) ssb 626528..627049 (+) 522 WP_004260894.1 single-stranded DNA-binding protein Machinery gene
  G7Y73_RS02720 (BML2531_05420) - 627334..627741 (-) 408 WP_004260890.1 helix-turn-helix domain-containing protein -
  G7Y73_RS02725 (BML2531_05430) - 627984..629156 (-) 1173 WP_164564522.1 MFS transporter -
  G7Y73_RS02730 ivbL 629488..629577 (+) 90 WP_099975407.1 ilvB operon leader peptide IvbL -
  G7Y73_RS02735 (BML2531_05440) ilvB 629681..631378 (+) 1698 WP_036958316.1 acetolactate synthase large subunit -
  G7Y73_RS02740 (BML2531_05450) ilvN 631381..631665 (+) 285 WP_004260877.1 acetolactate synthase small subunit -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18535.56 Da        Isoelectric Point: 4.9468

>NTDB_id=77944 G7Y73_RS02715 WP_004260894.1 626528..627049(+) (ssb) [Providencia rettgeri strain BML2531]
MASRGVNKVILIGNLGQDPEIRYMPNGGAVANLTLATSESWRDKQTGEMREKTEWHRVVIFGKLAEVAGEYLKKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGSMQMLGGRGGDAASQGQGGQGGWGQPQQPQAAQQFSGGGAPAARSPAPAPQT
NEPPMDFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=77944 G7Y73_RS02715 WP_004260894.1 626528..627049(+) (ssb) [Providencia rettgeri strain BML2531]
ATGGCCAGCAGAGGCGTAAATAAAGTAATTCTTATCGGTAACCTAGGACAAGATCCAGAAATCCGTTATATGCCTAACGG
CGGAGCTGTGGCAAACCTGACTCTGGCAACTTCTGAAAGTTGGCGTGACAAGCAAACCGGTGAGATGCGTGAAAAAACCG
AATGGCACCGCGTGGTTATTTTCGGCAAATTAGCGGAAGTGGCAGGTGAATACCTGAAAAAAGGTTCACAAGTCTATATC
GAAGGTTCTCTGCAAACACGTAAATGGCAAGACCAAAGTGGTCAAGACCGTTACACGACAGAAGTTGTTGTGAATATCGG
CGGCTCAATGCAAATGCTAGGTGGCCGTGGCGGTGATGCAGCATCACAAGGTCAAGGCGGCCAAGGCGGTTGGGGCCAAC
CTCAACAGCCACAAGCAGCACAACAATTTAGTGGTGGCGGAGCTCCAGCCGCACGCTCACCAGCACCTGCTCCACAAACT
AATGAACCACCAATGGATTTCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.667

100

0.746
  ssb Glaesserella parasuis strain SC1401

57.143

100

0.624
  ssb Neisseria meningitidis MC58

48.045

100

0.497
  ssb Neisseria gonorrhoeae MS11

46.927

100

0.486

Multiple sequence alignment