Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   pBML2531_RS08625 Genome accession   NZ_AP022372
Coordinates   1893828..1894349 (+) Length   173 a.a.
NCBI ID   WP_094961402.1    Uniprot ID   -
Organism   Providencia rettgeri strain BML2526     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1888828..1899349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  pBML2531_RS08615 (BML2526_16740) - 1888956..1890152 (+) 1197 WP_036958319.1 amino acid aminotransferase -
  pBML2531_RS08620 (BML2526_16750) uvrA 1890233..1893067 (-) 2835 WP_164454952.1 excinuclease ABC subunit UvrA -
  pBML2531_RS08625 (BML2526_16760) ssb 1893828..1894349 (+) 522 WP_094961402.1 single-stranded DNA-binding protein Machinery gene
  pBML2531_RS08630 (BML2526_16770) - 1894634..1895041 (-) 408 WP_004260890.1 helix-turn-helix domain-containing protein -
  pBML2531_RS08635 (BML2526_16780) - 1895284..1896456 (-) 1173 WP_004260887.1 MFS transporter -
  pBML2531_RS08640 ivbL 1896788..1896877 (+) 90 WP_099975407.1 ilvB operon leader peptide IvbL -
  pBML2531_RS08645 (BML2526_16790) ilvB 1896981..1898678 (+) 1698 WP_094961401.1 acetolactate synthase large subunit -
  pBML2531_RS08650 (BML2526_16800) ilvN 1898681..1898965 (+) 285 WP_004260877.1 acetolactate synthase small subunit -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18525.53 Da        Isoelectric Point: 4.9468

>NTDB_id=77929 pBML2531_RS08625 WP_094961402.1 1893828..1894349(+) (ssb) [Providencia rettgeri strain BML2526]
MASRGVNKVILIGNLGQDPEIRYMPNGGAVANLTLATSESWRDKQTGEMREKTEWHRVVIFGKLAEVAGEYLKKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGSMQMLGGRGGDAASQGQGGQGGWGQPQQPQAAQQFSGGGAPAARSSAPAPQT
NEPPMDFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=77929 pBML2531_RS08625 WP_094961402.1 1893828..1894349(+) (ssb) [Providencia rettgeri strain BML2526]
ATGGCCAGCAGAGGCGTAAATAAAGTAATTCTTATCGGTAACCTAGGACAAGATCCAGAAATCCGTTATATGCCTAACGG
CGGAGCTGTGGCAAACCTGACTCTGGCAACTTCTGAAAGTTGGCGTGACAAGCAAACCGGTGAGATGCGTGAAAAAACCG
AATGGCACCGCGTGGTTATTTTCGGCAAATTAGCGGAAGTGGCAGGTGAATACCTGAAAAAAGGTTCACAAGTCTATATC
GAAGGTTCTTTGCAAACACGTAAATGGCAAGATCAAAGTGGTCAAGACCGTTACACGACAGAAGTTGTTGTGAATATCGG
TGGCTCAATGCAAATGCTAGGTGGCCGTGGCGGTGATGCAGCATCACAAGGTCAAGGCGGCCAAGGCGGTTGGGGCCAAC
CTCAACAGCCGCAAGCAGCACAGCAATTTAGTGGTGGCGGAGCTCCAGCCGCACGCTCATCAGCGCCTGCTCCACAGACT
AATGAACCACCAATGGATTTCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.667

100

0.746
  ssb Glaesserella parasuis strain SC1401

57.143

100

0.624
  ssb Neisseria meningitidis MC58

47.458

100

0.486
  ssb Neisseria gonorrhoeae MS11

47.458

100

0.486

Multiple sequence alignment