Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G7Y72_RS18140 Genome accession   NZ_AP022371
Coordinates   3905710..3906231 (-) Length   173 a.a.
NCBI ID   WP_096864666.1    Uniprot ID   -
Organism   Providencia rettgeri strain BML2496     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3900710..3911231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7Y72_RS18125 (BML2496_35700) - 3900727..3902736 (-) 2010 WP_164561231.1 integrase -
  G7Y72_RS18130 (BML2496_35710) - 3902729..3904312 (-) 1584 WP_002024923.1 tyrosine-type recombinase/integrase -
  G7Y72_RS18135 (BML2496_35720) - 3904318..3905490 (-) 1173 WP_032471330.1 site-specific integrase -
  G7Y72_RS18140 (BML2496_35730) ssb 3905710..3906231 (-) 522 WP_096864666.1 single-stranded DNA-binding protein Machinery gene
  G7Y72_RS18145 (BML2496_35740) uvrA 3906832..3909666 (+) 2835 WP_004260897.1 excinuclease ABC subunit UvrA -
  G7Y72_RS18150 (BML2496_35750) - 3909747..3910943 (-) 1197 WP_036958319.1 amino acid aminotransferase -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18551.56 Da        Isoelectric Point: 4.9468

>NTDB_id=77918 G7Y72_RS18140 WP_096864666.1 3905710..3906231(-) (ssb) [Providencia rettgeri strain BML2496]
MASRGVNKVILIGNLGQDPEIRYMPNGGAVANLTLATSESWRDKQTGEMREKTEWHRVVIFGKLAEVAGEYLKKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGSMQMLGGRGGDAPSQGQGGQGGWGQPQQPQAAQQFSGGGAPAARSSAPAPQT
NEPPMDFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=77918 G7Y72_RS18140 WP_096864666.1 3905710..3906231(-) (ssb) [Providencia rettgeri strain BML2496]
ATGGCCAGCAGAGGCGTAAATAAAGTAATTCTTATCGGTAACCTAGGACAAGATCCAGAAATCCGTTATATGCCTAACGG
CGGAGCTGTGGCAAACCTGACTCTGGCAACTTCTGAAAGTTGGCGTGACAAGCAAACCGGTGAGATGCGTGAAAAAACCG
AATGGCACCGCGTGGTTATTTTCGGCAAATTAGCGGAAGTGGCGGGTGAATATCTGAAAAAAGGTTCACAAGTCTATATA
GAAGGTTCTTTGCAAACACGTAAATGGCAAGATCAAAGTGGTCAAGACCGTTACACGACAGAAGTTGTTGTGAATATCGG
TGGCTCAATGCAAATGCTAGGTGGCCGTGGCGGTGATGCACCATCACAAGGTCAAGGCGGCCAAGGCGGTTGGGGCCAAC
CTCAACAGCCTCAAGCAGCACAACAATTTAGTGGTGGCGGAGCTCCAGCCGCACGCTCATCAGCACCTGCTCCACAAACT
AATGAACCACCAATGGATTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.222

100

0.751
  ssb Glaesserella parasuis strain SC1401

56.15

100

0.607
  ssb Neisseria gonorrhoeae MS11

47.458

100

0.486
  ssb Neisseria meningitidis MC58

46.927

100

0.486

Multiple sequence alignment