Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PML25_RS13935 Genome accession   NZ_CP116672
Coordinates   3372061..3372585 (-) Length   174 a.a.
NCBI ID   WP_168958897.1    Uniprot ID   A0A6V7DWB6
Organism   Xanthomonas hortorum pv. pelargonii strain 305     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3367061..3377585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PML25_RS13930 (PML25_13930) - 3369554..3371752 (-) 2199 WP_168958896.1 TonB-dependent receptor -
  PML25_RS13935 (PML25_13935) ssb 3372061..3372585 (-) 525 WP_168958897.1 single-stranded DNA-binding protein Machinery gene
  PML25_RS13940 (PML25_13940) - 3372859..3373857 (+) 999 WP_168958925.1 polyprenyl synthetase family protein -
  PML25_RS13945 (PML25_13945) murD 3374060..3375469 (-) 1410 WP_168958898.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  PML25_RS13950 (PML25_13950) murL 3375450..3376805 (-) 1356 WP_168958899.1 UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L- glutamate epimerase -
  PML25_RS13955 (PML25_13955) - 3376802..3377260 (-) 459 WP_104551994.1 hypothetical protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18787.69 Da        Isoelectric Point: 5.3177

>NTDB_id=778994 PML25_RS13935 WP_168958897.1 3372061..3372585(-) (ssb) [Xanthomonas hortorum pv. pelargonii strain 305]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGGMGGDRPQRAQAPRQQQGGGGGGQGGGQDYAPRRQQPAQQQS
APPMDDFADDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=778994 PML25_RS13935 WP_168958897.1 3372061..3372585(-) (ssb) [Xanthomonas hortorum pv. pelargonii strain 305]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCGTGAGCCTGGCCACGACCAGCATGCGCAAGGACCGCGAAGGCAACAACCAGGAGCGCACCGAGTGGC
ACCGCGTGGTGTTCTTCGGAAAGCTGGGCGAAATCGCCGGTGAGTACCTGCGCAAGGGCTCGCAGGTGTACGTCGAAGGC
GAGTTGCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAAAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGTGAAGGCGGTGGTGGCGGTGGCATGGGCGGCGATCGTCCGCAGCGCGCGCAGGCGCCGCGCCAGC
AGCAGGGTGGCGGCGGTGGCGGTCAGGGCGGCGGTCAGGATTATGCCCCGCGTCGTCAGCAGCCGGCCCAGCAGCAGTCC
GCGCCGCCGATGGACGACTTTGCCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6V7DWB6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.703

100

0.489
  ssb Glaesserella parasuis strain SC1401

46.409

100

0.483
  ssb Neisseria meningitidis MC58

44.944

100

0.46
  ssb Neisseria gonorrhoeae MS11

44.944

100

0.46