Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PMC74_RS02605 Genome accession   NZ_CP116669
Coordinates   571801..572352 (+) Length   183 a.a.
NCBI ID   WP_033703483.1    Uniprot ID   A0A6L6TJ34
Organism   Pseudomonas capeferrum strain TDA1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 566801..577352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PMC74_RS02590 (PMC74_02590) bfr 566900..567364 (+) 465 WP_008089766.1 bacterioferritin -
  PMC74_RS02595 (PMC74_02595) uvrA 567433..570267 (-) 2835 WP_162525131.1 excinuclease ABC subunit UvrA -
  PMC74_RS02600 (PMC74_02600) - 570397..571791 (+) 1395 WP_095065585.1 MFS transporter -
  PMC74_RS02605 (PMC74_02605) ssb 571801..572352 (+) 552 WP_033703483.1 single-stranded DNA-binding protein Machinery gene
  PMC74_RS02610 (PMC74_02610) - 572461..572955 (-) 495 WP_077068794.1 GlcG/HbpS family heme-binding protein -
  PMC74_RS02615 (PMC74_02615) - 573084..574472 (-) 1389 WP_156311418.1 PLP-dependent aminotransferase family protein -
  PMC74_RS02620 (PMC74_02620) - 574916..575941 (+) 1026 WP_033703480.1 TauD/TfdA family dioxygenase -
  PMC74_RS02625 (PMC74_02625) - 575973..576758 (+) 786 WP_033703479.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20421.52 Da        Isoelectric Point: 5.9312

>NTDB_id=778964 PMC74_RS02605 WP_033703483.1 571801..572352(+) (ssb) [Pseudomonas capeferrum strain TDA1]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQNQQGGGDQYNQGGGNNYNQGGQQQQYNQAPPRQQAQRPQQAPQR
PAPQQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=778964 PMC74_RS02605 WP_033703483.1 571801..572352(+) (ssb) [Pseudomonas capeferrum strain TDA1]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCTACCAGCGAGCAGTGGACCGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGCGTGTCGATGTTCGGCAAGGTTGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACCGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGTCGTCCGCAGAACCAGCAAGGTGGCGGCGACCAGTACAACCAGGGTGGTGGTAACAACTACA
ACCAGGGCGGCCAGCAGCAACAGTACAACCAGGCGCCGCCACGTCAGCAGGCCCAACGCCCGCAGCAGGCTCCTCAGCGC
CCAGCGCCGCAGCAGCCAGCGCCGCAGCCGGCCGCTGACTTTGACAGCTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L6TJ34

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.348

100

0.546
  ssb Glaesserella parasuis strain SC1401

50.267

100

0.514
  ssb Neisseria meningitidis MC58

49.189

100

0.497
  ssb Neisseria gonorrhoeae MS11

49.189

100

0.497