Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   QYH60_RS04535 Genome accession   NZ_CP129292
Coordinates   855737..856261 (-) Length   174 a.a.
NCBI ID   WP_301401448.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain KMGR2-43     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 850737..861261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYH60_RS04515 (QYH60_04515) - 851087..852217 (+) 1131 WP_014570781.1 aminotransferase -
  QYH60_RS04520 (QYH60_04520) - 852409..853902 (+) 1494 WP_015427125.1 basic amino acid/polyamine antiporter -
  QYH60_RS04525 (QYH60_04525) - 853981..854472 (+) 492 WP_010906273.1 prolyl-tRNA synthetase associated domain-containing protein -
  QYH60_RS04530 (QYH60_04530) dinB 854551..855645 (+) 1095 WP_023164600.1 DNA polymerase IV -
  QYH60_RS04535 (QYH60_04535) cclA/cilC 855737..856261 (-) 525 WP_301401448.1 A24 family peptidase Machinery gene
  QYH60_RS04540 (QYH60_04540) - 856428..856874 (+) 447 WP_004254538.1 Dps family protein -
  QYH60_RS04545 (QYH60_04545) - 856957..857343 (-) 387 WP_004254540.1 rhodanese-like domain-containing protein -
  QYH60_RS04550 (QYH60_04550) - 857346..858317 (-) 972 WP_017865099.1 ROK family glucokinase -
  QYH60_RS04555 (QYH60_04555) - 858351..858572 (-) 222 WP_010906270.1 YqgQ family protein -
  QYH60_RS04560 (QYH60_04560) - 858764..859492 (+) 729 WP_023188628.1 LytTR family transcriptional regulator DNA-binding domain-containing protein -
  QYH60_RS04565 (QYH60_04565) - 859792..860118 (+) 327 WP_058207945.1 lactococcin 972 family bacteriocin -
  QYH60_RS04570 (QYH60_04570) - 860128..860808 (+) 681 WP_301401450.1 hypothetical protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 20256.15 Da        Isoelectric Point: 8.8043

>NTDB_id=778170 QYH60_RS04535 WP_301401448.1 855737..856261(-) (cclA/cilC) [Lactococcus lactis subsp. lactis strain KMGR2-43]
MDILFIFVIGSIFGSFFGLIVDRIPLRKSIIFGRSHCDSCQQLLAYRDLIPIFSQISSGSHCRYCKSKIPYLYVFLEFSS
ALIFVLAWVNYLKPSQFLLIILSLILSAFDYRQHSFPFVIWFIFALSFILIFPLSPLFYFWLILAVLAEKFNLRVGSGDF
LWFFTASFSLTFLN

Nucleotide


Download         Length: 525 bp        

>NTDB_id=778170 QYH60_RS04535 WP_301401448.1 855737..856261(-) (cclA/cilC) [Lactococcus lactis subsp. lactis strain KMGR2-43]
ATGGACATTTTATTTATATTTGTAATTGGAAGTATTTTTGGCTCCTTTTTTGGCTTAATAGTTGACCGTATTCCACTAAG
AAAATCAATTATTTTTGGACGCTCACATTGTGATTCTTGTCAGCAACTTTTAGCCTATCGTGATCTAATTCCTATTTTTT
CTCAAATAAGCTCTGGCTCACATTGCCGTTATTGTAAAAGTAAAATTCCATATTTATATGTTTTTTTGGAGTTCTCATCA
GCTTTAATTTTTGTTTTAGCTTGGGTAAATTATCTTAAACCTAGTCAATTTTTACTGATTATTCTTTCACTAATTTTATC
TGCTTTTGATTATCGTCAGCACAGTTTTCCTTTTGTTATCTGGTTTATTTTTGCACTCAGTTTTATTTTAATATTTCCTC
TTTCTCCCCTTTTCTATTTTTGGCTTATTTTAGCCGTCTTAGCTGAAAAATTCAATTTAAGAGTTGGCAGCGGTGATTTT
TTATGGTTTTTTACCGCTTCATTTTCTCTAACTTTCTTAAACTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

41.279

98.851

0.408
  cclA/cilC Streptococcus pneumoniae Rx1

41.667

96.552

0.402
  cclA/cilC Streptococcus pneumoniae D39

41.667

96.552

0.402
  cclA/cilC Streptococcus pneumoniae R6

41.667

96.552

0.402
  cclA/cilC Streptococcus pneumoniae TIGR4

41.071

96.552

0.397
  cclA/cilC Streptococcus mitis NCTC 12261

39.053

97.126

0.379