Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   QYH60_RS03120 Genome accession   NZ_CP129292
Coordinates   613748..614341 (+) Length   197 a.a.
NCBI ID   WP_003131995.1    Uniprot ID   Q9CDL2
Organism   Lactococcus lactis subsp. lactis strain KMGR2-43     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 608748..619341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYH60_RS03110 (QYH60_03110) - 610841..611536 (+) 696 WP_301401281.1 hypothetical protein -
  QYH60_RS03115 (QYH60_03115) hexB 611665..613635 (+) 1971 WP_301401282.1 DNA mismatch repair endonuclease MutL Machinery gene
  QYH60_RS03120 (QYH60_03120) ruvA 613748..614341 (+) 594 WP_003131995.1 Holliday junction branch migration protein RuvA Machinery gene
  QYH60_RS03125 (QYH60_03125) ruvB 614468..615469 (+) 1002 WP_003131994.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QYH60_RS03130 (QYH60_03130) - 615606..616490 (+) 885 WP_012898698.1 XRE/MutR family transcriptional regulator -
  QYH60_RS03135 (QYH60_03135) - 616710..617000 (+) 291 WP_058208533.1 hypothetical protein -
  QYH60_RS03140 (QYH60_03140) - 617067..618251 (+) 1185 WP_301401283.1 ABC transporter permease -
  QYH60_RS03145 (QYH60_03145) - 618248..618865 (+) 618 WP_058208535.1 ABC transporter ATP-binding protein -
  QYH60_RS03150 (QYH60_03150) - 618970..619134 (+) 165 WP_003131988.1 hypothetical protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21166.73 Da        Isoelectric Point: 5.8174

>NTDB_id=778153 QYH60_RS03120 WP_003131995.1 613748..614341(+) (ruvA) [Lactococcus lactis subsp. lactis strain KMGR2-43]
MFEYLNGKLVKISPTNIVIDVAGIGYLISVANPYAWSALMNTEVKIYVHQVIREDAHSLYGFVNEAEKALFLRLISVSGI
GPKSALAIIAAADNEGLITAIDNSDIKYLTKFPGVGKKTAMQMVLDLAGKFDATGTVGISLLDAGPAGNLALEEAIEALQ
ALGYKATELKKIEKKLAQETGLTSEEYIKSALKLMMK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=778153 QYH60_RS03120 WP_003131995.1 613748..614341(+) (ruvA) [Lactococcus lactis subsp. lactis strain KMGR2-43]
ATGTTTGAATATCTTAATGGAAAATTAGTAAAAATTTCCCCAACAAATATTGTAATTGATGTAGCAGGAATTGGTTATCT
TATCAGTGTAGCTAACCCTTACGCTTGGTCGGCTTTGATGAACACAGAAGTAAAAATTTATGTTCATCAAGTCATTCGCG
AAGATGCCCACAGCCTCTATGGTTTTGTTAACGAGGCCGAAAAAGCTTTATTCTTACGTCTGATCAGCGTTTCTGGGATT
GGGCCAAAATCAGCTCTGGCCATCATTGCGGCGGCTGATAACGAAGGTTTAATCACTGCTATTGACAATAGTGATATCAA
GTATTTAACTAAATTTCCAGGAGTTGGTAAAAAAACAGCCATGCAGATGGTGCTTGATTTGGCTGGGAAATTTGATGCGA
CAGGAACTGTAGGTATTTCTCTTCTTGATGCTGGACCTGCTGGCAATCTTGCTTTGGAAGAAGCGATTGAAGCGCTACAA
GCTTTGGGTTATAAAGCAACAGAATTGAAGAAAATTGAGAAAAAATTAGCTCAAGAAACAGGTCTGACCAGCGAAGAATA
TATCAAATCAGCCTTAAAACTTATGATGAAATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-196)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CDL2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

60.101

100

0.604
  ruvA Streptococcus pneumoniae R6

60.101

100

0.604
  ruvA Streptococcus pneumoniae D39

60.101

100

0.604
  ruvA Bacillus subtilis subsp. subtilis str. 168

44.828

100

0.462