Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicK   Type   Regulator
Locus tag   QYH60_RS00545 Genome accession   NZ_CP129292
Coordinates   97662..99104 (+) Length   480 a.a.
NCBI ID   WP_301401204.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain KMGR2-43     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 92662..104104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYH60_RS00510 (QYH60_00510) - 92866..93057 (+) 192 WP_012897234.1 hypothetical protein -
  QYH60_RS00515 (QYH60_00515) rsmI 93134..94009 (-) 876 WP_301401202.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  QYH60_RS00520 (QYH60_00520) yabA 94009..94335 (-) 327 WP_011675472.1 DNA replication initiation control protein YabA -
  QYH60_RS00525 (QYH60_00525) yaaT 94328..95110 (-) 783 WP_301401203.1 stage 0 sporulation family protein Regulator
  QYH60_RS00530 (QYH60_00530) - 95162..96022 (-) 861 WP_012897231.1 DNA polymerase III subunit delta' -
  QYH60_RS00535 (QYH60_00535) tmk 96155..96790 (-) 636 WP_012897230.1 dTMP kinase -
  QYH60_RS00540 (QYH60_00540) yycF 96968..97669 (+) 702 WP_003131580.1 response regulator YycF -
  QYH60_RS00545 (QYH60_00545) vicK 97662..99104 (+) 1443 WP_301401204.1 cell wall metabolism sensor histidine kinase WalK Regulator
  QYH60_RS00550 (QYH60_00550) vicX 99273..100085 (+) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  QYH60_RS00555 (QYH60_00555) groL 100131..101759 (-) 1629 WP_003131585.1 chaperonin GroEL -
  QYH60_RS00560 (QYH60_00560) groES 101848..102132 (-) 285 WP_003131589.1 co-chaperone GroES -
  QYH60_RS00565 (QYH60_00565) - 102252..102641 (-) 390 WP_010905314.1 single-stranded DNA-binding protein -
  QYH60_RS00570 (QYH60_00570) nox 102731..104071 (-) 1341 WP_023188995.1 H2O-forming NADH oxidase -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 54721.18 Da        Isoelectric Point: 4.5625

>NTDB_id=778136 QYH60_RS00545 WP_301401204.1 97662..99104(+) (vicK) [Lactococcus lactis subsp. lactis strain KMGR2-43]
MIKFFNSMIFKEVVAHLLLFVILFMSSFDYNFAHLSTFIGYYLFSLVFVLVFLNQQHRMIVNVSKQMNDIKNGYLNRDKI
PKGTSEINELYDEILKLGEDIVRTQNNLENQRNQLDSILAYMVDGVIATDRRGNIIMANKSALHYLNTDNDLLMQKNIVE
VLKIADQYNFYDLLEKEPEITIETHDAGNESISLHIKFALFRRESGFISGIIAVLHDMTEQDKAERERRLFVSNVSHELR
TPLTSVKAYLEALEDGAIEDKETASSFINVSLTETNRMIRMISDLLTLSRMDQDRIVLNKEMINLIAFLDYQINRLDQIL
ETESNDLISSNFTLVRKYSEQPIWVEIDTDKIAQVIDNIIGNAIKYSPKGGTITISVEKRESDVLISISDQGMGIPKSDL
LKIFDRFYRVDNASRNSKVGGTGLGLSIVHDIVKIHGGTIFASSEGEGKGTTFSFTLPYSLEAADDWDDGTDEFEFEDNE

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=778136 QYH60_RS00545 WP_301401204.1 97662..99104(+) (vicK) [Lactococcus lactis subsp. lactis strain KMGR2-43]
ATGATTAAATTTTTTAATTCAATGATTTTTAAAGAAGTAGTTGCACACCTACTTCTTTTTGTCATCCTTTTTATGAGCAG
TTTTGATTACAATTTTGCTCATTTAAGTACTTTTATTGGTTATTACTTATTTTCACTCGTCTTTGTTTTAGTCTTTCTCA
ATCAGCAACATCGCATGATTGTGAATGTTTCTAAACAGATGAATGACATAAAAAATGGCTATTTAAATCGGGATAAAATC
CCAAAAGGGACGAGTGAAATCAATGAATTATATGATGAAATTTTAAAACTTGGTGAAGATATTGTTCGCACGCAGAACAA
TCTTGAAAATCAGCGTAATCAATTAGATAGTATTCTCGCATATATGGTTGATGGCGTCATTGCCACCGATCGTCGTGGAA
ATATTATTATGGCCAATAAATCAGCTTTGCATTATTTGAATACAGATAATGATCTCTTGATGCAAAAAAATATTGTTGAA
GTTTTAAAAATTGCTGACCAATATAATTTTTATGATTTATTAGAAAAAGAACCTGAAATAACTATTGAGACACATGATGC
TGGGAATGAATCCATTTCGCTCCACATTAAATTTGCCCTCTTTCGTCGTGAATCTGGTTTCATCTCAGGAATTATTGCCG
TCTTACATGATATGACTGAACAAGACAAGGCCGAACGAGAGCGCCGTCTCTTTGTTTCCAATGTTTCTCATGAACTCCGA
ACTCCGCTCACCTCAGTAAAAGCCTACTTGGAAGCACTAGAAGACGGAGCCATTGAGGATAAAGAAACAGCTTCATCCTT
TATTAATGTTTCACTTACTGAAACTAATCGGATGATTCGAATGATTTCCGACCTTTTGACTTTATCAAGAATGGATCAAG
ACCGAATCGTTCTTAATAAAGAAATGATTAATTTAATTGCCTTCTTAGACTATCAAATTAACCGTTTAGACCAAATTTTA
GAAACCGAATCAAACGATTTAATCTCTTCTAATTTCACTCTAGTCAGAAAATACTCTGAACAGCCCATCTGGGTCGAAAT
TGATACCGATAAAATTGCTCAAGTCATTGACAATATCATCGGAAATGCAATTAAGTATTCACCTAAAGGTGGAACTATTA
CAATTTCCGTTGAAAAACGTGAAAGTGACGTTCTAATCTCCATCAGTGACCAAGGAATGGGAATTCCAAAATCTGATTTA
CTTAAGATTTTTGACCGTTTCTACCGAGTTGATAATGCTTCAAGAAATTCAAAAGTTGGGGGGACAGGTTTAGGCCTTTC
CATTGTCCATGATATTGTTAAAATACATGGCGGAACAATTTTTGCAAGCTCCGAAGGAGAAGGAAAAGGAACGACCTTTA
GTTTCACTCTTCCATATTCTTTAGAAGCCGCAGATGACTGGGATGATGGCACTGATGAGTTTGAATTTGAGGATAATGAA
TAA

Domains

Predicted by InterProScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(348-459)

PAS domain (PAS_9)

(124-220)

His Kinase A (phospho-acceptor) domain (HisKA)

(228-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicK Streptococcus mutans UA159

51.559

86.875

0.448
  micB Streptococcus pneumoniae Cp1015

47.748

92.5

0.442