Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   QYH60_RS00550 Genome accession   NZ_CP129292
Coordinates   99273..100085 (+) Length   270 a.a.
NCBI ID   WP_003131583.1    Uniprot ID   Q9CIG7
Organism   Lactococcus lactis subsp. lactis strain KMGR2-43     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 94273..105085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYH60_RS00525 (QYH60_00525) yaaT 94328..95110 (-) 783 WP_301401203.1 stage 0 sporulation family protein Regulator
  QYH60_RS00530 (QYH60_00530) - 95162..96022 (-) 861 WP_012897231.1 DNA polymerase III subunit delta' -
  QYH60_RS00535 (QYH60_00535) tmk 96155..96790 (-) 636 WP_012897230.1 dTMP kinase -
  QYH60_RS00540 (QYH60_00540) yycF 96968..97669 (+) 702 WP_003131580.1 response regulator YycF -
  QYH60_RS00545 (QYH60_00545) vicK 97662..99104 (+) 1443 WP_301401204.1 cell wall metabolism sensor histidine kinase WalK Regulator
  QYH60_RS00550 (QYH60_00550) vicX 99273..100085 (+) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  QYH60_RS00555 (QYH60_00555) groL 100131..101759 (-) 1629 WP_003131585.1 chaperonin GroEL -
  QYH60_RS00560 (QYH60_00560) groES 101848..102132 (-) 285 WP_003131589.1 co-chaperone GroES -
  QYH60_RS00565 (QYH60_00565) - 102252..102641 (-) 390 WP_010905314.1 single-stranded DNA-binding protein -
  QYH60_RS00570 (QYH60_00570) nox 102731..104071 (-) 1341 WP_023188995.1 H2O-forming NADH oxidase -
  QYH60_RS00575 (QYH60_00575) ytpR 104234..104860 (-) 627 WP_003131594.1 YtpR family tRNA-binding protein -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30522.37 Da        Isoelectric Point: 5.8494

>NTDB_id=778137 QYH60_RS00550 WP_003131583.1 99273..100085(+) (vicX) [Lactococcus lactis subsp. lactis strain KMGR2-43]
MTEQNGFKYSILASGSTGNSFYLETPKKKILVDAGLSGKKIESLLSEIDRDIHDIDALLITHEHSDHIKGIGVLARKYGI
DLYANEDTWSELDSKNALGKIPVEQKHLFEMGKTMTFGDIDIESFGVSHDAIAPQFYRFMKDNKSFVMLTDTGYVSDRMR
GTIENADAYLMESNHDIEILRMGAYPWRTKQRILSDQGHLSNEDGAEAAFSIHGNKTKRIFLGHLSLNNNIKELAHLTMD
GYLQQHDVDTKKDLKILDTSHEHASQLYDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=778137 QYH60_RS00550 WP_003131583.1 99273..100085(+) (vicX) [Lactococcus lactis subsp. lactis strain KMGR2-43]
ATGACTGAACAAAATGGCTTTAAATATTCCATTTTAGCCTCTGGTTCAACAGGAAATTCTTTTTACTTAGAAACTCCAAA
GAAAAAAATTCTTGTTGATGCCGGACTATCTGGAAAAAAAATAGAAAGTTTACTATCAGAAATTGACCGTGACATTCATG
ATATTGATGCTTTATTAATTACCCATGAACATAGTGACCATATCAAAGGGATTGGTGTTTTGGCAAGAAAATATGGTATT
GACCTTTACGCAAATGAAGATACTTGGTCTGAACTAGATAGTAAAAATGCTTTAGGAAAAATCCCTGTTGAACAAAAACA
TCTGTTTGAAATGGGAAAAACAATGACTTTTGGTGATATTGATATTGAATCTTTCGGCGTGAGTCACGATGCTATCGCAC
CACAGTTTTATCGTTTCATGAAAGATAACAAAAGTTTTGTTATGCTAACTGATACAGGTTATGTATCCGATAGAATGCGT
GGAACCATTGAAAATGCAGATGCTTATCTTATGGAATCAAACCATGACATTGAGATACTCCGCATGGGAGCCTATCCTTG
GCGGACAAAGCAACGTATCCTAAGTGACCAAGGCCACTTATCTAATGAGGACGGCGCTGAGGCTGCTTTTAGTATTCATG
GTAATAAAACAAAACGAATTTTTCTAGGGCACTTGAGTTTAAATAATAATATCAAAGAACTTGCTCATCTTACTATGGAT
GGTTACTTACAGCAACATGATGTCGATACCAAAAAGGACTTGAAGATCCTTGATACTAGTCACGAACATGCTAGTCAACT
TTACGATATTTAG

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CIG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

68.519

100

0.685