Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QYN12_RS22535 Genome accession   NZ_CP129272
Coordinates   4568024..4568560 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain G12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4563024..4573560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYN12_RS22515 (QYN12_22515) soxR 4564753..4565217 (-) 465 WP_039004760.1 redox-sensitive transcriptional activator SoxR -
  QYN12_RS22520 (QYN12_22520) soxS 4565303..4565626 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  QYN12_RS22525 (QYN12_22525) pdeC 4565629..4567215 (-) 1587 WP_000017978.1 c-di-GMP phosphodiesterase PdeC -
  QYN12_RS22530 (QYN12_22530) yjcB 4567644..4567925 (+) 282 WP_001295689.1 YjcB family protein -
  QYN12_RS22535 (QYN12_22535) ssb 4568024..4568560 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QYN12_RS22540 (QYN12_22540) uvrA 4568815..4571637 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  QYN12_RS22545 (QYN12_22545) yjbR 4571672..4572028 (-) 357 WP_000155648.1 MmcQ/YjbR family DNA-binding protein -
  QYN12_RS22550 (QYN12_22550) yjbQ 4572032..4572448 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  QYN12_RS22555 (QYN12_22555) aphA 4572559..4573272 (-) 714 WP_001317548.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=778036 QYN12_RS22535 WP_000168305.1 4568024..4568560(-) (ssb) [Escherichia coli strain G12]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=778036 QYN12_RS22535 WP_000168305.1 4568024..4568560(-) (ssb) [Escherichia coli strain G12]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAATGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489