Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PML95_RS02105 Genome accession   NZ_CP116507
Coordinates   410687..411190 (-) Length   167 a.a.
NCBI ID   WP_126762176.1    Uniprot ID   A0AAE9XMW7
Organism   Vagococcus lutrae strain K204-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 405687..416190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PML95_RS02085 (PML95_02085) - 406746..408365 (+) 1620 WP_272163492.1 ABC-F family ATP-binding cassette domain-containing protein -
  PML95_RS02090 (PML95_02090) dnaB 408438..409799 (-) 1362 WP_023606931.1 replicative DNA helicase -
  PML95_RS02095 (PML95_02095) rplI 409829..410281 (-) 453 WP_126762172.1 50S ribosomal protein L9 -
  PML95_RS02100 (PML95_02100) rpsR 410426..410665 (-) 240 WP_126762174.1 30S ribosomal protein S18 -
  PML95_RS02105 (PML95_02105) ssbA 410687..411190 (-) 504 WP_126762176.1 single-stranded DNA-binding protein Machinery gene
  PML95_RS02110 (PML95_02110) rpsF 411233..411532 (-) 300 WP_126762178.1 30S ribosomal protein S6 -
  PML95_RS02115 (PML95_02115) gyrA 411703..414168 (-) 2466 WP_272163493.1 DNA gyrase subunit A -
  PML95_RS02120 (PML95_02120) gyrB 414192..416147 (-) 1956 WP_126762183.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18502.39 Da        Isoelectric Point: 4.9114

>NTDB_id=777690 PML95_RS02105 WP_126762176.1 410687..411190(-) (ssbA) [Vagococcus lutrae strain K204-1]
MINNVVLVGRLTKDPDLRYTANGVAVATFTLAIDRPFTNQSGNREADFINTVIWRKPAETLANYARKGTLIGVVGRIQTR
NYENQQGQRVYVTEVVADSFQFLESKSVNEQRRQGSGSDFGAQPNNNQSFNQSSSSMPQQGMPDFGRDSDPFASSAKIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=777690 PML95_RS02105 WP_126762176.1 410687..411190(-) (ssbA) [Vagococcus lutrae strain K204-1]
ATGATTAATAATGTCGTACTAGTAGGTAGATTAACTAAAGATCCAGATTTGCGTTATACAGCAAATGGTGTCGCTGTTGC
AACATTCACCTTGGCAATCGATCGTCCATTTACAAATCAAAGTGGTAATCGTGAAGCAGATTTTATCAACACGGTGATTT
GGCGAAAGCCCGCAGAGACATTGGCTAATTATGCACGAAAAGGAACTTTAATTGGTGTTGTAGGACGTATTCAAACACGT
AACTATGAAAACCAACAAGGTCAACGTGTCTATGTGACAGAAGTGGTAGCAGATAGTTTCCAATTCTTAGAGTCGAAGTC
AGTCAATGAACAACGACGTCAAGGCTCTGGTTCAGATTTTGGTGCTCAACCTAATAATAACCAAAGTTTTAATCAGTCAT
CATCTTCAATGCCTCAACAAGGTATGCCGGATTTTGGTCGTGATTCAGACCCATTCGCATCATCAGCTAAGATAGATATC
TCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.522

100

0.623
  ssb Latilactobacillus sakei subsp. sakei 23K

59.649

100

0.611
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

63.473

0.389
  ssb Glaesserella parasuis strain SC1401

32.461

100

0.371