Detailed information NTG0077769

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: SNM_RS08465
• Genome accession: NZ_AP025613
• Coordinates: 1550598..1551572 (+)
• Length: 324 a.a.
• NCBI ID: WP_024119065.1
• Uniprot ID: -
• Organism: Thermus thermophilus strain SNM6-6
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1545598..1556572

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SNM_RS08440 (TthSNM66_16510)	lysN	1546092..1547285 (+)	1194	WP_244346539.1	2-aminoadipate transaminase	-
SNM_RS08445	-	1547454..1547717 (+)	264	WP_244341401.1	hypothetical protein	-
SNM_RS08450 (TthSNM66_16530)	-	1547923..1548816 (-)	894	WP_244346540.1	site-specific DNA-methyltransferase	-
SNM_RS08455 (TthSNM66_16540)	-	1548813..1549739 (-)	927	WP_014630113.1	RluA family pseudouridine synthase	-
SNM_RS08460 (TthSNM66_16550)	panB	1549787..1550572 (-)	786	WP_011227914.1	3-methyl-2-oxobutanoate hydroxymethyltransferase	-
SNM_RS08465 (TthSNM66_16560)	ruvB	1550598..1551572 (+)	975	WP_024119065.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
SNM_RS08470 (TthSNM66_16570)	-	1551569..1552600 (+)	1032	WP_011172495.1	DUF4388 domain-containing protein	-
SNM_RS08475 (TthSNM66_16580)	-	1552621..1553973 (-)	1353	WP_008631640.1	tetratricopeptide repeat protein	-
SNM_RS08480 (TthSNM66_16590)	ftsH	1554046..1555902 (+)	1857	WP_244341398.1	ATP-dependent zinc metalloprotease FtsH	-
SNM_RS08485 (TthSNM66_16600)	-	1555888..1556316 (-)	429	WP_244346541.1	hypothetical protein	-

Sequence

Protein

• Length: 324 a.a.
• Molecular weight: 35959.72 Da
• Isoelectric Point: 6.3227

>NTDB_id=77769 SNM_RS08465 WP_024119065.1 1550598..1551572(+) (ruvB) [Thermus thermophilus strain SNM6-6]
MDDLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDL
AAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFG
IVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGL
DELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVATELAYRHLGYPPPVGP
LLEP

Nucleotide

• Length: 975 bp

>NTDB_id=77769 SNM_RS08465 WP_024119065.1 1550598..1551572(+) (ruvB) [Thermus thermophilus strain SNM6-6]
GTGGACGACCTCGCCCTTAGGCCCAAGACCCTGGACGAGTACATCGGCCAGGAGCGCCTGAAGCAAAAGCTCCGGGTCTA
CCTCGAGGCGGCCAAGGCCCGAAAAGAGCCCTTGGAGCACCTCCTCCTCTTCGGCCCCCCGGGCCTGGGCAAGACCACCC
TGGCCCACGTCATCGCCCACGAGCTTGGGGTCAACCTCCGGGTCACCTCCGGGCCCGCCATAGAGAAGCCCGGGGACCTC
GCCGCCATCCTGGCCAACTCCCTGGAGGAAGGGGACATCCTCTTCATTGACGAGATCCACCGCCTGAGCCGCCAGGCCGA
GGAGCACCTCTACCCCGCCATGGAGGACTTCGTCATGGACATCGTCATCGGCCAGGGTCCGGCGGCGAGGACGATCCGGC
TGGAGCTTCCCCGCTTCACCCTGATCGGGGCCACCACCCGGCCCGGCCTCATCACCGCGCCCCTCTTGAGCCGCTTCGGC
ATCGTGGAGCACCTGGAGTACTACACCCCCGAGGAGCTGGCCCAAGGGGTGATGCGGGACGCCCGCCTCCTCGGGGTGAG
GATCACGGAGGAGGCCGCCCTGGAGATCGGTAGGCGGAGCCGGGGCACCATGCGCGTCGCCAAGCGCCTCTTCCGGAGGG
TGCGGGACTTCGCCCAGGTGGCGGGGGAGGAGGTCATCACCCGGGAGCGGGCCCTGGAGGCCCTTGCCGCCCTGGGCCTG
GACGAGCTGGGCTTGGAGAAGCGGGACCGGGAGATCCTGGAGGTCCTCATCCTCCGCTTCGGCGGCGGCCCCGTGGGCCT
CGCCACCCTGGCCACCGCCCTCTCCGAGGACCCGGGCACCTTGGAAGAGGTGCACGAGCCCTACCTCATCCGCCAGGGCC
TTTTGAAGCGCACCCCCCGGGGCCGGGTGGCCACGGAACTGGCCTACCGCCACCTGGGCTACCCGCCCCCGGTGGGCCCC
CTCTTGGAGCCGTGA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (168-241)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (6-165)

• RuvB C-terminal winged helix domain (WHD_RuvB) (242-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	59.105	96.605	0.571
ruvB	Streptococcus pneumoniae TIGR4	56.774	95.679	0.543
ruvB	Streptococcus pneumoniae R6	56.774	95.679	0.543
ruvB	Streptococcus pneumoniae D39	56.774	95.679	0.543
ruvB	Synechocystis sp. PCC 6803	51.258	98.148	0.503
ruvB	Helicobacter pylori 26695	50.799	96.605	0.491