Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | PML89_RS05610 | Genome accession | NZ_CP116503 |
| Coordinates | 1188997..1189500 (+) | Length | 167 a.a. |
| NCBI ID | WP_126762176.1 | Uniprot ID | A0AAE9XMW7 |
| Organism | Vagococcus lutrae strain K136-2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1161840..1199532 | 1188997..1189500 | within | 0 |
Gene organization within MGE regions
Location: 1161840..1199532
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PML89_RS05475 (PML89_05475) | - | 1161840..1162601 (-) | 762 | WP_023606897.1 | ParA family protein | - |
| PML89_RS05480 (PML89_05480) | rsmG | 1162696..1163418 (-) | 723 | WP_023606898.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| PML89_RS05485 (PML89_05485) | - | 1163582..1163830 (-) | 249 | WP_152514079.1 | hypothetical protein | - |
| PML89_RS05490 (PML89_05490) | - | 1164499..1165437 (-) | 939 | WP_272157937.1 | Abi family protein | - |
| PML89_RS05495 (PML89_05495) | - | 1166200..1166730 (-) | 531 | WP_252999045.1 | hypothetical protein | - |
| PML89_RS05500 (PML89_05500) | - | 1166751..1167335 (-) | 585 | WP_272157939.1 | hypothetical protein | - |
| PML89_RS05505 (PML89_05505) | - | 1167804..1169540 (-) | 1737 | WP_252999043.1 | DNA primase family protein | - |
| PML89_RS05510 (PML89_05510) | - | 1169537..1170355 (-) | 819 | WP_252999042.1 | bifunctional DNA primase/polymerase | - |
| PML89_RS05515 (PML89_05515) | - | 1170348..1170686 (-) | 339 | WP_252999041.1 | hypothetical protein | - |
| PML89_RS05520 (PML89_05520) | - | 1170676..1170888 (-) | 213 | WP_252999040.1 | hypothetical protein | - |
| PML89_RS05525 (PML89_05525) | - | 1170982..1171158 (-) | 177 | WP_252999039.1 | hypothetical protein | - |
| PML89_RS05530 (PML89_05530) | - | 1171195..1171461 (-) | 267 | WP_252999038.1 | DNA-binding protein | - |
| PML89_RS05535 (PML89_05535) | - | 1171618..1172235 (+) | 618 | WP_272157940.1 | helix-turn-helix domain-containing protein | - |
| PML89_RS05540 (PML89_05540) | - | 1172280..1173449 (+) | 1170 | WP_272157941.1 | site-specific integrase | - |
| PML89_RS05545 (PML89_05545) | mnmG | 1173520..1175427 (-) | 1908 | WP_272157942.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG | - |
| PML89_RS05550 (PML89_05550) | mnmE | 1175441..1176832 (-) | 1392 | WP_023606901.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE | - |
| PML89_RS05555 (PML89_05555) | jag | 1177005..1177739 (-) | 735 | WP_126762187.1 | RNA-binding cell elongation regulator Jag/EloR | - |
| PML89_RS05560 (PML89_05560) | - | 1177768..1178592 (-) | 825 | WP_023606903.1 | YidC/Oxa1 family membrane protein insertase | - |
| PML89_RS05565 (PML89_05565) | rnpA | 1178611..1178958 (-) | 348 | WP_023606904.1 | ribonuclease P protein component | - |
| PML89_RS05570 (PML89_05570) | rpmH | 1179098..1179232 (-) | 135 | WP_023606905.1 | 50S ribosomal protein L34 | - |
| PML89_RS05575 (PML89_05575) | dnaA | 1179821..1181164 (+) | 1344 | WP_023606906.1 | chromosomal replication initiator protein DnaA | - |
| PML89_RS05580 (PML89_05580) | dnaN | 1181330..1182460 (+) | 1131 | WP_272158216.1 | DNA polymerase III subunit beta | - |
| PML89_RS05585 (PML89_05585) | yaaA | 1182653..1182904 (+) | 252 | WP_023606923.1 | S4 domain-containing protein YaaA | - |
| PML89_RS05590 (PML89_05590) | recF | 1182901..1184031 (+) | 1131 | WP_252999035.1 | DNA replication/repair protein RecF | - |
| PML89_RS05595 (PML89_05595) | gyrB | 1184028..1185983 (+) | 1956 | WP_126762183.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| PML89_RS05600 (PML89_05600) | gyrA | 1186007..1188484 (+) | 2478 | WP_252999034.1 | DNA gyrase subunit A | - |
| PML89_RS05605 (PML89_05605) | rpsF | 1188655..1188954 (+) | 300 | WP_126762178.1 | 30S ribosomal protein S6 | - |
| PML89_RS05610 (PML89_05610) | ssbA | 1188997..1189500 (+) | 504 | WP_126762176.1 | single-stranded DNA-binding protein | Machinery gene |
| PML89_RS05615 (PML89_05615) | rpsR | 1189522..1189761 (+) | 240 | WP_126762174.1 | 30S ribosomal protein S18 | - |
| PML89_RS05620 (PML89_05620) | rplI | 1189906..1190358 (+) | 453 | WP_252999033.1 | 50S ribosomal protein L9 | - |
| PML89_RS05625 (PML89_05625) | dnaB | 1190388..1191749 (+) | 1362 | WP_023606931.1 | replicative DNA helicase | - |
| PML89_RS05630 (PML89_05630) | - | 1191819..1193438 (-) | 1620 | WP_023606932.1 | ABC-F family ATP-binding cassette domain-containing protein | - |
| PML89_RS05635 (PML89_05635) | - | 1193579..1194565 (-) | 987 | WP_376715796.1 | polyprenyl synthetase family protein | - |
| PML89_RS05640 (PML89_05640) | - | 1194589..1195134 (-) | 546 | WP_252999031.1 | Gx transporter family protein | - |
| PML89_RS05645 (PML89_05645) | - | 1195217..1197109 (-) | 1893 | WP_252999030.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| PML89_RS05650 (PML89_05650) | pplA | 1197369..1198298 (+) | 930 | WP_023606936.1 | extracellular electron transfer flavoprotein PplA | - |
| PML89_RS05655 (PML89_05655) | - | 1198423..1199532 (+) | 1110 | WP_311878060.1 | FAD:protein FMN transferase | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18502.39 Da Isoelectric Point: 4.9114
>NTDB_id=777678 PML89_RS05610 WP_126762176.1 1188997..1189500(+) (ssbA) [Vagococcus lutrae strain K136-2]
MINNVVLVGRLTKDPDLRYTANGVAVATFTLAIDRPFTNQSGNREADFINTVIWRKPAETLANYARKGTLIGVVGRIQTR
NYENQQGQRVYVTEVVADSFQFLESKSVNEQRRQGSGSDFGAQPNNNQSFNQSSSSMPQQGMPDFGRDSDPFASSAKIDI
SDDDLPF
MINNVVLVGRLTKDPDLRYTANGVAVATFTLAIDRPFTNQSGNREADFINTVIWRKPAETLANYARKGTLIGVVGRIQTR
NYENQQGQRVYVTEVVADSFQFLESKSVNEQRRQGSGSDFGAQPNNNQSFNQSSSSMPQQGMPDFGRDSDPFASSAKIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=777678 PML89_RS05610 WP_126762176.1 1188997..1189500(+) (ssbA) [Vagococcus lutrae strain K136-2]
ATGATTAATAATGTCGTACTAGTAGGTAGATTAACTAAAGATCCAGATTTGCGTTATACAGCAAACGGTGTCGCTGTTGC
AACATTCACCTTGGCAATCGATCGTCCATTTACAAATCAAAGTGGTAATCGTGAAGCAGATTTTATCAACACGGTGATTT
GGCGAAAGCCCGCAGAGACATTGGCTAATTATGCACGAAAAGGGACTCTGATTGGTGTGGTAGGACGTATTCAAACACGT
AACTATGAAAACCAACAAGGTCAACGTGTCTATGTGACAGAAGTGGTAGCAGATAGTTTCCAATTCTTAGAGTCGAAGTC
AGTCAATGAACAACGACGTCAAGGCTCTGGTTCAGATTTTGGTGCTCAACCTAATAATAACCAAAGTTTTAATCAGTCAT
CATCTTCAATGCCTCAACAAGGTATGCCGGATTTTGGTCGTGATTCAGACCCATTCGCATCATCAGCTAAGATAGATATC
TCAGATGATGATTTACCATTCTAA
ATGATTAATAATGTCGTACTAGTAGGTAGATTAACTAAAGATCCAGATTTGCGTTATACAGCAAACGGTGTCGCTGTTGC
AACATTCACCTTGGCAATCGATCGTCCATTTACAAATCAAAGTGGTAATCGTGAAGCAGATTTTATCAACACGGTGATTT
GGCGAAAGCCCGCAGAGACATTGGCTAATTATGCACGAAAAGGGACTCTGATTGGTGTGGTAGGACGTATTCAAACACGT
AACTATGAAAACCAACAAGGTCAACGTGTCTATGTGACAGAAGTGGTAGCAGATAGTTTCCAATTCTTAGAGTCGAAGTC
AGTCAATGAACAACGACGTCAAGGCTCTGGTTCAGATTTTGGTGCTCAACCTAATAATAACCAAAGTTTTAATCAGTCAT
CATCTTCAATGCCTCAACAAGGTATGCCGGATTTTGGTCGTGATTCAGACCCATTCGCATCATCAGCTAAGATAGATATC
TCAGATGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.522 |
100 |
0.623 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.649 |
100 |
0.611 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
61.321 |
63.473 |
0.389 |
| ssb | Glaesserella parasuis strain SC1401 |
32.461 |
100 |
0.371 |