Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   BV187_RS02505 Genome accession   NZ_CP116490
Coordinates   513058..513564 (-) Length   168 a.a.
NCBI ID   WP_105893549.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 93P10H1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 508058..518564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV187_RS02475 (BV187_0505) nudC 508551..509345 (-) 795 WP_105893547.1 NAD(+) diphosphatase -
  BV187_RS02480 (BV187_0506) nfuA 509412..510008 (-) 597 WP_005649300.1 Fe-S biogenesis protein NfuA -
  BV187_RS02485 (BV187_0507) - 510084..510770 (-) 687 WP_011272045.1 ComF family protein -
  BV187_RS02490 (BV187_0508) comE 510783..512120 (-) 1338 WP_011272046.1 type IV pilus secretin PilQ Machinery gene
  BV187_RS02495 (BV187_0509) comD 512130..512543 (-) 414 WP_011272047.1 pilus assembly protein PilP Machinery gene
  BV187_RS02500 (BV187_0510) comC 512540..513061 (-) 522 WP_105893548.1 competence protein ComC Machinery gene
  BV187_RS02505 (BV187_0511) comB 513058..513564 (-) 507 WP_105893549.1 competence protein B Machinery gene
  BV187_RS02510 (BV187_0512) comA 513565..514362 (-) 798 WP_105893550.1 competence protein ComA Machinery gene
  BV187_RS02515 (BV187_0513) - 514461..517061 (+) 2601 WP_105893551.1 penicillin-binding protein 1A -
  BV187_RS02520 (BV187_0514) - 517134..517979 (+) 846 WP_011961682.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  BV187_RS02525 (BV187_0515) - 518132..518461 (+) 330 WP_011961681.1 YbaB/EbfC family nucleoid-associated protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 19881.69 Da        Isoelectric Point: 9.5661

>NTDB_id=777575 BV187_RS02505 WP_105893549.1 513058..513564(-) (comB) [Haemophilus influenzae strain 93P10H1]
MSMNLLPWRIYQHQKRLRRLVFYFALFILLTINLALAFSHLIEQQKQNSQAQQKSFEQLNQQLHKTATQIDLLRSAVKVG
EVLQPLTNEQVQNSLQRLSELPLQKGELNRFKQDAHNLSLEGRAQDQTEFESVHQFLNKHFPNVKLSQVQPEQHTLFFRF
DMEQGEEK

Nucleotide


Download         Length: 507 bp        

>NTDB_id=777575 BV187_RS02505 WP_105893549.1 513058..513564(-) (comB) [Haemophilus influenzae strain 93P10H1]
ATGTCGATGAATTTATTGCCTTGGCGTATTTATCAACATCAAAAGCGTTTACGTCGTTTAGTTTTTTATTTCGCTTTATT
TATCTTACTTACAATCAATTTAGCCTTGGCTTTTAGCCATTTGATTGAACAACAGAAACAAAATTCGCAGGCGCAGCAAA
AGTCGTTTGAACAACTTAATCAGCAACTTCACAAAACTGCCACGCAAATTGATCTGTTACGTAGTGCGGTGAAAGTTGGT
GAAGTTTTACAACCTCTCACGAATGAGCAAGTCCAAAATAGTTTGCAGCGATTAAGTGAATTACCTCTTCAGAAAGGCGA
ATTAAACCGATTTAAACAAGATGCCCATAACTTAAGTTTGGAAGGTCGAGCACAAGATCAAACAGAATTTGAATCGGTAC
ATCAATTTTTAAATAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAGCCTGAACAACATACATTGTTTTTTCGCTTT
GATATGGAACAAGGAGAGGAAAAGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Haemophilus influenzae 86-028NP

82.143

100

0.821
  comB Haemophilus influenzae Rd KW20

82.143

100

0.821