Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QU831_RS16510 Genome accession   NZ_CP129240
Coordinates   3263027..3263563 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain 1344_LBHALD     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3258027..3268563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU831_RS16485 (QU831_16485) yigZ 3258300..3258914 (+) 615 WP_001295262.1 IMPACT family protein -
  QU831_RS16490 (QU831_16490) trkH 3258953..3260404 (+) 1452 WP_000545677.1 Trk system potassium transporter TrkH -
  QU831_RS16495 (QU831_16495) hemG 3260416..3260961 (+) 546 WP_000853959.1 menaquinone-dependent protoporphyrinogen IX dehydrogenase -
  QU831_RS25585 - 3261212..3261286 (-) 75 WP_367281860.1 IS1 family transposase -
  QU831_RS16500 (QU831_16500) pdeC 3261342..3262217 (-) 876 Protein_3234 c-di-GMP phosphodiesterase PdeC -
  QU831_RS16505 (QU831_16505) yjcB 3262647..3262928 (+) 282 WP_001295689.1 YjcB family protein -
  QU831_RS16510 (QU831_16510) ssb 3263027..3263563 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QU831_RS16515 (QU831_16515) uvrA 3263817..3266639 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  QU831_RS16520 (QU831_16520) yjbR 3266674..3267030 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  QU831_RS16525 (QU831_16525) yjbQ 3267034..3267450 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  QU831_RS16530 (QU831_16530) aphA 3267561..3268274 (-) 714 WP_001307512.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=777544 QU831_RS16510 WP_000168305.1 3263027..3263563(-) (ssb) [Escherichia coli strain 1344_LBHALD]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=777544 QU831_RS16510 WP_000168305.1 3263027..3263563(-) (ssb) [Escherichia coli strain 1344_LBHALD]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489