Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BV189_RS01500 Genome accession   NZ_CP116489
Coordinates   325870..326376 (+) Length   168 a.a.
NCBI ID   WP_042611853.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 93P28H1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 320870..331376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV189_RS01495 (BV189_0311) uvrA 322886..325717 (-) 2832 WP_105893353.1 excinuclease ABC subunit UvrA -
  BV189_RS01500 (BV189_0312) ssb 325870..326376 (+) 507 WP_042611853.1 single-stranded DNA-binding protein Machinery gene
  BV189_RS01505 (BV189_0313) - 326554..327381 (-) 828 WP_105891596.1 energy transducer TonB -
  BV189_RS01510 (BV189_0314) exbD 327391..327834 (-) 444 WP_005648853.1 TonB system transport protein ExbD -
  BV189_RS01515 (BV189_0315) exbB 327838..328290 (-) 453 WP_042611366.1 TonB-system energizer ExbB -
  BV189_RS01520 (BV189_0316) bcp 328433..328900 (-) 468 WP_021034363.1 thioredoxin-dependent thiol peroxidase -
  BV189_RS01525 (BV189_0317) dapA 329001..329897 (+) 897 WP_005660633.1 4-hydroxy-tetrahydrodipicolinate synthase -
  BV189_RS01530 (BV189_0318) bamC 330009..330656 (+) 648 WP_042611855.1 outer membrane protein assembly factor BamC -
  BV189_RS01535 (BV189_0319) hpf 330828..331151 (+) 324 WP_005653397.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18786.57 Da        Isoelectric Point: 5.2649

>NTDB_id=777526 BV189_RS01500 WP_042611853.1 325870..326376(+) (ssb) [Haemophilus influenzae strain 93P28H1]
MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNAGGYSNDMGSTPQSSYQARQTNNGGSYQSSRPAPQQAAPQAEPPMD
GFDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=777526 BV189_RS01500 WP_042611853.1 325870..326376(+) (ssb) [Haemophilus influenzae strain 93P28H1]
ATGGCTGGAATTAATAAAGTCATTATTGTAGGTCATTTAGGTAATGATCCTGAAATTCGTACTATGCCAAACGGCGATGC
CGTTGCAAATATCAGCGTAGCAACCAGTGAAAGCTGGAACGATCGTAATACGGGCGAACGCCGTGAAGTAACAGAATGGC
ACCGCATTGTATTTTATCGTCGTCAAGCAGAGATTTGCGGCGAATACTTGCGCAAAGGTTCTCAAGTGTATGTGGAAGGT
CGTTTAAAAACACGTAAATGGCAAGATCAAAATGGTCAAGATCGCTACACCACAGAAATTCAAGGCGATGTAATGCAAAT
GCTTGGTGGACGTAATCAAAACGCAGGTGGTTATAGCAATGATATGGGCAGTACACCACAATCCTCTTACCAAGCTCGTC
AAACTAACAATGGTGGTAGTTATCAATCATCTCGTCCAGCTCCACAACAAGCTGCACCACAGGCTGAACCACCAATGGAT
GGATTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

66.851

100

0.72
  ssb Vibrio cholerae strain A1552

56.897

100

0.589
  ssb Neisseria meningitidis MC58

51.149

100

0.53
  ssb Neisseria gonorrhoeae MS11

50.867

100

0.524