Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QYE79_RS26260 Genome accession   NZ_CP129200
Coordinates   5578996..5580054 (+) Length   352 a.a.
NCBI ID   WP_003086123.1    Uniprot ID   Q02IC9
Organism   Pseudomonas aeruginosa strain PA942     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5573996..5585054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYE79_RS26235 (QYE79_26235) - 5574256..5574726 (-) 471 WP_003086103.1 Dps family protein -
  QYE79_RS26240 (QYE79_26240) aspS 5575166..5576941 (+) 1776 WP_003123218.1 aspartate--tRNA ligase -
  QYE79_RS26245 (QYE79_26245) - 5577008..5577754 (+) 747 WP_003086107.1 YebC/PmpR family DNA-binding transcriptional regulator -
  QYE79_RS26250 (QYE79_26250) ruvC 5577839..5578363 (+) 525 WP_003112575.1 crossover junction endodeoxyribonuclease RuvC -
  QYE79_RS26255 (QYE79_26255) ruvA 5578380..5578985 (+) 606 WP_003086122.1 Holliday junction branch migration protein RuvA -
  QYE79_RS26260 (QYE79_26260) ruvB 5578996..5580054 (+) 1059 WP_003086123.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QYE79_RS26265 (QYE79_26265) ybgC 5580107..5580553 (+) 447 WP_003086124.1 tol-pal system-associated acyl-CoA thioesterase -
  QYE79_RS26270 (QYE79_26270) tolQ 5580555..5581250 (+) 696 WP_003086125.1 protein TolQ -
  QYE79_RS26275 (QYE79_26275) tolR 5581273..5581713 (+) 441 WP_003086126.1 protein TolR -
  QYE79_RS26280 (QYE79_26280) tolA 5581716..5582759 (+) 1044 WP_003086127.1 cell envelope integrity protein TolA -
  QYE79_RS26285 (QYE79_26285) tolB 5582756..5584054 (+) 1299 WP_003086128.1 Tol-Pal system beta propeller repeat protein TolB -
  QYE79_RS26290 (QYE79_26290) pal 5584107..5584613 (+) 507 WP_003111417.1 peptidoglycan-associated lipoprotein Pal -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38932.67 Da        Isoelectric Point: 5.1792

>NTDB_id=777480 QYE79_RS26260 WP_003086123.1 5578996..5580054(+) (ruvB) [Pseudomonas aeruginosa strain PA942]
MIEPDRLISAVSGRERDEQLDRAIRPLKLADYIGQPSVREQMELFIHAARGRQEALDHTLIFGPPGLGKTTLANIIAQEM
GVSIKSTSGPVLERPGDLAALLTNLEAGDVLFVDEIHRLSPIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVG
ATTRAGMLTNPLRDRFGIVQRLEFYNVEDLATIVSRSAGILGLEIEPQGAAEIAKRARGTPRIANRLLRRVRDFAEVRGQ
GDITRVIADKALNLLDVDERGFDHLDRRLLLTMIDKFDGGPVGIDNLAAALSEERHTIEDVLEPYLIQQGYIMRTPRGRV
VTRHAYLHFGLNIPKRLGPGVTTDLFTSEDGN

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=777480 QYE79_RS26260 WP_003086123.1 5578996..5580054(+) (ruvB) [Pseudomonas aeruginosa strain PA942]
ATGATCGAGCCTGATCGCCTCATATCCGCCGTTTCCGGTCGCGAACGCGATGAGCAGCTGGACCGCGCCATTCGCCCGCT
GAAGCTGGCCGACTACATCGGCCAGCCCAGCGTGCGCGAGCAGATGGAGCTGTTCATCCATGCCGCGCGCGGCCGCCAGG
AGGCGCTCGACCATACGCTGATCTTCGGTCCGCCGGGGCTGGGCAAGACGACCCTGGCGAATATCATCGCCCAGGAAATG
GGCGTTTCCATCAAGAGTACTTCCGGGCCGGTGCTCGAGCGTCCCGGCGATCTCGCCGCGTTGCTGACCAACCTGGAGGC
CGGCGACGTCCTGTTCGTCGACGAGATCCACCGTCTTTCGCCCATCGTCGAAGAAGTGCTGTATCCGGCCATGGAAGATT
TCCAGTTGGACATCATGATCGGCGAAGGGCCCGCGGCCCGCTCCATCAAGCTGGACCTGCCGCCGTTCACCCTGGTCGGC
GCGACCACTCGTGCCGGCATGCTGACCAATCCACTGCGCGATCGCTTCGGTATCGTCCAGCGCCTGGAGTTCTACAACGT
CGAGGACCTGGCGACCATCGTCAGTCGGTCGGCCGGCATTCTCGGCCTGGAGATCGAGCCGCAGGGCGCGGCGGAAATCG
CCAAGCGCGCCCGCGGTACGCCGCGAATCGCCAATCGCCTGCTGCGCCGGGTACGCGACTTCGCCGAGGTCCGGGGGCAG
GGCGACATTACCCGGGTGATCGCCGACAAGGCATTGAACCTGCTCGATGTCGACGAGCGTGGCTTCGACCACCTCGACCG
TCGTCTGTTGCTGACCATGATCGACAAGTTCGATGGCGGGCCTGTAGGAATCGACAACTTGGCTGCGGCGTTGAGCGAGG
AGCGGCACACGATCGAAGATGTACTGGAGCCCTATCTGATCCAGCAGGGCTACATCATGCGGACACCGCGGGGACGCGTG
GTAACACGCCATGCGTACCTGCACTTTGGCCTGAATATTCCGAAAAGGTTGGGGCCGGGGGTGACGACGGATCTGTTCAC
GTCTGAAGATGGTAATTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-329)

RuvB AAA lid domain (AAA_lid_4)

(185-258)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(24-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02IC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

61.027

94.034

0.574
  ruvB Streptococcus pneumoniae TIGR4

59.062

90.909

0.537
  ruvB Streptococcus pneumoniae R6

58.75

90.909

0.534
  ruvB Streptococcus pneumoniae D39

58.75

90.909

0.534
  ruvB Synechocystis sp. PCC 6803

57.143

91.477

0.523
  ruvB Helicobacter pylori 26695

55.449

88.636

0.491