Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PJU76_RS01630 Genome accession   NZ_CP116458
Coordinates   341240..341713 (+) Length   157 a.a.
NCBI ID   WP_271780209.1    Uniprot ID   -
Organism   Acidithiobacillus ferriphilus strain YL25     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 336240..346713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJU76_RS01615 (PJU76_01615) trxA 336751..337620 (-) 870 WP_271780206.1 thioredoxin -
  PJU76_RS01620 (PJU76_01620) - 337731..338285 (-) 555 WP_271780207.1 hypothetical protein -
  PJU76_RS01625 (PJU76_01625) uvrA 338350..341154 (-) 2805 WP_271780208.1 excinuclease ABC subunit UvrA -
  PJU76_RS01630 (PJU76_01630) ssb 341240..341713 (+) 474 WP_271780209.1 single-stranded DNA-binding protein Machinery gene
  PJU76_RS01635 (PJU76_01635) - 341763..343313 (-) 1551 WP_271780210.1 UvrB domain 3-containing protein -
  PJU76_RS01640 (PJU76_01640) - 343310..343696 (-) 387 WP_271780211.1 hypothetical protein -
  PJU76_RS01645 (PJU76_01645) - 343693..345159 (-) 1467 WP_271780212.1 ATP-binding protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17027.78 Da        Isoelectric Point: 5.0792

>NTDB_id=777466 PJU76_RS01630 WP_271780209.1 341240..341713(+) (ssb) [Acidithiobacillus ferriphilus strain YL25]
MAGVNKVILLGHLGRDPEMRYQPSGGAIANFSIATSETFKDKEGNKQERTEWHRVVLFGRTAEIAGEYLRKGSMAYVEGR
LQTRKWTDKEGQERYTTEIVGDRLQLVGARGGGGGGAASFDEEDQSRPSGGGSSAGSSRKSEMPPAPAEDFDDDIPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=777466 PJU76_RS01630 WP_271780209.1 341240..341713(+) (ssb) [Acidithiobacillus ferriphilus strain YL25]
ATGGCGGGAGTGAACAAGGTCATATTGTTGGGGCATCTGGGACGGGACCCGGAGATGCGTTATCAGCCCAGTGGCGGCGC
CATCGCGAACTTCAGCATCGCGACTTCCGAGACCTTCAAGGACAAGGAAGGCAACAAGCAGGAGCGCACCGAATGGCATC
GGGTGGTGCTCTTCGGACGCACCGCGGAAATCGCCGGCGAATACCTGCGCAAGGGCAGCATGGCTTATGTGGAAGGCCGC
CTGCAGACGCGCAAGTGGACCGACAAGGAAGGACAGGAGCGCTACACCACGGAGATCGTCGGCGATCGTCTGCAACTGGT
GGGCGCGCGTGGGGGCGGTGGCGGCGGTGCGGCCAGCTTCGATGAGGAAGATCAGTCCCGGCCAAGTGGCGGCGGCAGCA
GTGCGGGGAGTTCGCGGAAGAGTGAGATGCCGCCGGCGCCGGCGGAGGATTTTGATGATGACATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.333

100

0.554
  ssb Vibrio cholerae strain A1552

49.711

100

0.548
  ssb Neisseria gonorrhoeae MS11

45.665

100

0.503
  ssb Neisseria meningitidis MC58

45.349

100

0.497