Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   PJV85_RS01385 Genome accession   NZ_CP116457
Coordinates   263616..265118 (+) Length   500 a.a.
NCBI ID   WP_010921891.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 1095     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 258616..270118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJV85_RS01370 (PJV85_01370) - 258669..259850 (-) 1182 WP_015055912.1 D-alanyl-D-alanine carboxypeptidase family protein -
  PJV85_RS01375 (PJV85_01375) pbp3 260018..261250 (-) 1233 WP_136274059.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  PJV85_RS01380 (PJV85_01380) amiA 261581..263551 (+) 1971 WP_136274058.1 peptide ABC transporter substrate-binding protein Regulator
  PJV85_RS01385 (PJV85_01385) amiC 263616..265118 (+) 1503 WP_010921891.1 ABC transporter permease Regulator
  PJV85_RS01390 (PJV85_01390) amiD 265118..266044 (+) 927 WP_010921892.1 oligopeptide ABC transporter permease OppC Regulator
  PJV85_RS01395 (PJV85_01395) amiE 266053..267123 (+) 1071 WP_136274057.1 ABC transporter ATP-binding protein Regulator
  PJV85_RS01400 (PJV85_01400) amiF 267116..268039 (+) 924 WP_002986000.1 ATP-binding cassette domain-containing protein Regulator
  PJV85_RS09105 - 268077..268160 (-) 84 Protein_233 IS3 family transposase -
  PJV85_RS09110 - 268298..268613 (-) 316 Protein_234 IS3 family transposase -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 56080.41 Da        Isoelectric Point: 10.1893

>NTDB_id=777424 PJV85_RS01385 WP_010921891.1 263616..265118(+) (amiC) [Streptococcus pyogenes strain 1095]
MKKYILNRIMRSLVSVVLVTALTYTIVYTLVPTSLIFKQDPNYNKMTTTPDKKVAYENLTFQRMGYVNYFSSKELKDNAS
KVDSSVTTEATSANKAIYEKYIDSLGNGWQLKRFPTSKQFYAIRNIPIYERVWNFFSNLVVIDHPWKIQDKDNPKLARYI
RLEKDKSVGWSLVGSGTKHKYLLYTNGKFPYLHQNFVTLNLGTSYPTYSNIPVLQVISQGQGRTALQDVTFPSGVTKKSS
VDIYSRSYKNPKSLDDITKVNYGKGDSYTKTINNYVDPSMIHNSFVIGFFGVMFSYIVGLPLGLFMARFKNTYFDSFSTA
TMTFMLALPSIAVIYVVRFLGGMVGLPDSFPMLGASDPKSYILPALILGILNIPTTVIWFRRYLVDLQASDWVRFARSKG
LSESEIYRGHLFKNAMVPIVSGVPASIILAIGGATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIVSLLLG
DIVMTLVDPRIKLSTKKGGK

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=777424 PJV85_RS01385 WP_010921891.1 263616..265118(+) (amiC) [Streptococcus pyogenes strain 1095]
ATGAAAAAATATATTTTAAACCGTATCATGCGATCGTTAGTGTCGGTAGTTCTGGTAACGGCTTTAACATACACCATCGT
ATATACTCTAGTACCTACCAGCCTTATCTTTAAACAAGACCCTAATTATAATAAAATGACAACAACACCAGATAAAAAAG
TAGCGTATGAAAATCTAACTTTTCAACGTATGGGTTATGTCAATTATTTTTCAAGCAAAGAATTAAAAGATAATGCTTCT
AAAGTAGATAGTAGTGTAACGACAGAAGCAACTAGTGCTAACAAAGCTATCTATGAGAAGTATATTGATTCTCTTGGCAA
TGGCTGGCAGCTAAAACGCTTCCCCACTAGCAAACAGTTTTATGCAATTCGCAATATTCCTATTTACGAACGTGTTTGGA
ACTTTTTCTCAAATCTAGTTGTTATTGATCACCCTTGGAAGATTCAGGATAAAGATAATCCAAAATTAGCTAGGTATATT
CGTCTAGAAAAAGATAAATCAGTTGGCTGGTCACTTGTTGGTTCGGGGACAAAACATAAGTATCTCCTCTATACTAACGG
AAAATTTCCTTATCTTCACCAAAACTTTGTTACCCTAAACTTAGGGACATCTTATCCAACATACAGCAATATTCCTGTTC
TTCAGGTCATTTCACAAGGGCAAGGACGAACAGCTCTTCAAGATGTGACCTTCCCATCAGGTGTCACTAAGAAATCGTCA
GTGGATATCTATAGCCGTAGCTACAAAAATCCAAAATCATTGGATGATATCACCAAGGTAAACTATGGTAAGGGAGATTC
CTACACTAAAACCATCAATAATTATGTCGACCCATCAATGATTCACAATTCTTTTGTAATTGGTTTTTTTGGTGTTATGT
TTTCCTATATCGTTGGTTTGCCTCTTGGTTTATTTATGGCTCGGTTTAAAAATACCTATTTTGACAGTTTCTCAACAGCG
ACCATGACCTTCATGCTTGCTTTACCAAGTATTGCTGTTATCTATGTTGTTCGCTTCCTAGGTGGCATGGTTGGTTTACC
AGATAGTTTCCCAATGCTGGGGGCATCTGATCCTAAATCTTATATTTTACCAGCCCTTATTTTAGGAATTTTAAATATTC
CAACTACGGTTATCTGGTTCCGTCGCTATCTTGTTGACCTTCAGGCCAGCGATTGGGTACGTTTTGCGCGTTCAAAAGGA
TTATCAGAATCTGAAATTTACAGAGGGCATCTCTTCAAAAATGCCATGGTCCCAATTGTGTCAGGGGTTCCTGCAAGTAT
TATCCTTGCTATTGGTGGTGCAACATTAACAGAGACTGTCTTTGCCTTCCCGGGTATGGGTAAAATGTTAATTGATTCTA
TTAAATCTGCTAACAATTCTATGATTGTTGGATTAACCTTTATCTTCACTGTCTTGTCAATTGTTTCACTTTTACTAGGA
GATATTGTCATGACCCTTGTCGATCCACGTATTAAATTGTCAACAAAAAAAGGAGGTAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

59.8

100

0.598
  amiC Streptococcus thermophilus LMD-9

59.4

100

0.594
  amiC Streptococcus thermophilus LMG 18311

59.4

100

0.594