Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   PJV85_RS01390 Genome accession   NZ_CP116457
Coordinates   265118..266044 (+) Length   308 a.a.
NCBI ID   WP_010921892.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 1095     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 260118..271044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJV85_RS01380 (PJV85_01380) amiA 261581..263551 (+) 1971 WP_136274058.1 peptide ABC transporter substrate-binding protein Regulator
  PJV85_RS01385 (PJV85_01385) amiC 263616..265118 (+) 1503 WP_010921891.1 ABC transporter permease Regulator
  PJV85_RS01390 (PJV85_01390) amiD 265118..266044 (+) 927 WP_010921892.1 oligopeptide ABC transporter permease OppC Regulator
  PJV85_RS01395 (PJV85_01395) amiE 266053..267123 (+) 1071 WP_136274057.1 ABC transporter ATP-binding protein Regulator
  PJV85_RS01400 (PJV85_01400) amiF 267116..268039 (+) 924 WP_002986000.1 ATP-binding cassette domain-containing protein Regulator
  PJV85_RS09105 - 268077..268160 (-) 84 Protein_233 IS3 family transposase -
  PJV85_RS09110 - 268298..268613 (-) 316 Protein_234 IS3 family transposase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34896.82 Da        Isoelectric Point: 8.5670

>NTDB_id=777425 PJV85_RS01390 WP_010921892.1 265118..266044(+) (amiD) [Streptococcus pyogenes strain 1095]
MESIDKSKFRFVERDSEASEVIDTPAYSYWKSVFRQFFSKKSTVFMLVILVTVLMMSFIYPMFANYDFNDVSNINDFSKR
YIWPNAEYWFGTDKNGQSLFDGVWYGARNSILISVIATLINITIGVVLGAIWGVSKAFDKVMIEIYNIISNIPSMLIIIV
LTYSLGAGFWNLILAFCITGWIGVAYSIRVQILRYRDLEYNLASQTLGTPMYKIAVKNLLPQLVSVIMTMLSQMLPVYVS
SEAFLSFFGIGLPTTTPSLGRFIANYSSNLTTNAYLFWIPLVTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=777425 PJV85_RS01390 WP_010921892.1 265118..266044(+) (amiD) [Streptococcus pyogenes strain 1095]
ATGGAATCGATTGATAAATCTAAATTTCGATTTGTTGAGCGCGATAGTGAAGCCTCCGAAGTGATTGATACCCCTGCTTA
TTCTTACTGGAAATCAGTGTTTCGTCAGTTTTTTTCTAAAAAATCTACAGTCTTTATGCTCGTAATTTTAGTGACAGTCT
TGATGATGAGCTTTATTTATCCAATGTTTGCTAACTACGACTTTAATGACGTTAGTAATATCAATGACTTTTCAAAGCGT
TATATTTGGCCAAATGCAGAGTACTGGTTTGGAACCGACAAAAATGGGCAATCTCTGTTTGATGGTGTTTGGTATGGGGC
ACGTAATTCTATTTTAATCTCAGTTATAGCGACACTAATTAATATCACCATTGGGGTAGTGTTAGGAGCCATATGGGGAG
TTTCTAAAGCATTTGATAAAGTTATGATTGAAATTTATAACATTATCTCAAATATCCCTTCTATGCTTATTATCATTGTT
TTGACCTATTCATTAGGTGCAGGATTTTGGAATTTGATTCTAGCTTTCTGTATCACTGGATGGATTGGTGTCGCCTACTC
CATCCGTGTTCAAATCTTGCGTTACCGTGATTTAGAATACAACCTTGCTAGTCAAACTTTGGGAACACCAATGTACAAGA
TTGCTGTTAAGAACCTCCTGCCTCAATTGGTTTCAGTTATCATGACTATGTTGTCACAAATGCTACCAGTTTATGTATCT
TCTGAGGCCTTCTTATCCTTCTTTGGGATTGGTTTACCAACCACCACTCCAAGTTTAGGACGTTTTATTGCTAATTATTC
AAGCAACTTAACAACAAATGCCTACCTCTTTTGGATTCCCTTAGTAACATTGATTTTAGTATCGTTACCACTATACATTG
TCGGACAAAACTTGGCTGATGCCAGTGACCCACGTTCACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

73.377

100

0.734
  amiD Streptococcus thermophilus LMG 18311

72.727

100

0.727
  amiD Streptococcus thermophilus LMD-9

72.727

100

0.727