Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QYE79_RS14540 Genome accession   NZ_CP129200
Coordinates   3037210..3037935 (+) Length   241 a.a.
NCBI ID   WP_096069378.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA942     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3032210..3042935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYE79_RS14510 (QYE79_14510) - 3032330..3033208 (-) 879 WP_023081616.1 allophanate hydrolase subunit 1 -
  QYE79_RS14515 (QYE79_14515) - 3033210..3034586 (-) 1377 WP_096069379.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  QYE79_RS14520 (QYE79_14520) - 3034597..3034845 (-) 249 WP_003084813.1 acetyl-CoA carboxylase -
  QYE79_RS14525 (QYE79_14525) - 3034922..3035680 (-) 759 WP_003111232.1 5-oxoprolinase subunit PxpA -
  QYE79_RS14530 (QYE79_14530) - 3035798..3036724 (+) 927 WP_003129068.1 LysR family transcriptional regulator -
  QYE79_RS14535 (QYE79_14535) - 3036778..3037071 (+) 294 WP_003084806.1 hypothetical protein -
  QYE79_RS14540 (QYE79_14540) comF 3037210..3037935 (+) 726 WP_096069378.1 ComF family protein Machinery gene
  QYE79_RS14545 (QYE79_14545) - 3037977..3038297 (+) 321 WP_031639707.1 YfiM family lipoprotein -
  QYE79_RS14550 (QYE79_14550) - 3038365..3039123 (+) 759 WP_003084796.1 TOBE domain-containing protein -
  QYE79_RS14555 (QYE79_14555) - 3039185..3040159 (+) 975 WP_023107657.1 serine/threonine protein kinase -
  QYE79_RS14560 (QYE79_14560) rarD 3040362..3041258 (+) 897 WP_023107656.1 EamA family transporter RarD -
  QYE79_RS14565 (QYE79_14565) - 3041947..3042462 (-) 516 WP_003084789.1 glycine cleavage system protein R -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27062.52 Da        Isoelectric Point: 11.2212

>NTDB_id=777426 QYE79_RS14540 WP_096069378.1 3037210..3037935(+) (comF) [Pseudomonas aeruginosa strain PA942]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLSNRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAERLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=777426 QYE79_RS14540 WP_096069378.1 3037210..3037935(+) (comF) [Pseudomonas aeruginosa strain PA942]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGTGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGAGCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGCTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGCCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGCGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382