Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QYE79_RS13355 Genome accession   NZ_CP129200
Coordinates   2820653..2821150 (-) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain PA942     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2815653..2826150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYE79_RS13335 (QYE79_13335) pchD 2816437..2818080 (+) 1644 WP_009316327.1 pyochelin biosynthesis salicyl-AMP ligase PchD -
  QYE79_RS13340 (QYE79_13340) pchC 2818077..2818832 (+) 756 WP_003114687.1 pyochelin biosynthesis editing thioesterase PchC -
  QYE79_RS13345 (QYE79_13345) pchB 2818832..2819137 (+) 306 WP_003106950.1 isochorismate lyase PchB -
  QYE79_RS13350 (QYE79_13350) pchA 2819134..2820564 (+) 1431 WP_096069829.1 isochorismate synthase PchA -
  QYE79_RS13355 (QYE79_13355) ssb 2820653..2821150 (-) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  QYE79_RS13360 (QYE79_13360) - 2821167..2822555 (-) 1389 WP_009316331.1 MFS transporter -
  QYE79_RS13365 (QYE79_13365) uvrA 2822769..2825606 (+) 2838 WP_023127008.1 excinuclease ABC subunit UvrA Machinery gene
  QYE79_RS13370 (QYE79_13370) bfr 2825678..2826142 (-) 465 WP_003093668.1 bacterioferritin -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=777422 QYE79_RS13355 WP_003114685.1 2820653..2821150(-) (ssb) [Pseudomonas aeruginosa strain PA942]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=777422 QYE79_RS13355 WP_003114685.1 2820653..2821150(-) (ssb) [Pseudomonas aeruginosa strain PA942]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGACTCGCAGCGTGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAGCCGGCCCAGGATTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515