Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PL336_RS10200 Genome accession   NZ_CP116423
Coordinates   2063513..2064013 (+) Length   166 a.a.
NCBI ID   WP_271687469.1    Uniprot ID   -
Organism   Sulfitobacter faviae strain SCSIO W_1865     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2058513..2069013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PL336_RS10185 (PL336_10185) - 2059783..2061873 (+) 2091 WP_271687467.1 ABC transporter ATP-binding protein -
  PL336_RS10190 (PL336_10190) - 2061979..2062506 (-) 528 WP_209218906.1 hypothetical protein -
  PL336_RS10195 (PL336_10195) - 2062687..2063232 (-) 546 WP_271689979.1 lytic transglycosylase domain-containing protein -
  PL336_RS10200 (PL336_10200) ssb 2063513..2064013 (+) 501 WP_271687469.1 single-stranded DNA-binding protein Machinery gene
  PL336_RS10205 (PL336_10205) aroB 2064264..2065370 (-) 1107 WP_271687471.1 3-dehydroquinate synthase -
  PL336_RS10210 (PL336_10210) - 2065363..2065959 (-) 597 WP_271687472.1 shikimate kinase -
  PL336_RS10215 (PL336_10215) - 2066040..2066189 (+) 150 WP_007120408.1 hypothetical protein -
  PL336_RS10220 (PL336_10220) - 2066195..2067841 (+) 1647 WP_331618938.1 hypothetical protein -
  PL336_RS10225 (PL336_10225) - 2067838..2068821 (+) 984 WP_271687475.1 site-specific tyrosine recombinase XerD -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 17211.78 Da        Isoelectric Point: 5.2704

>NTDB_id=777317 PL336_RS10200 WP_271687469.1 2063513..2064013(+) (ssb) [Sulfitobacter faviae strain SCSIO W_1865]
MAGSVNKVILIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERREKTEWHSVAIFQEGLVRVAEQYLKKGSKVYI
EGQLQTRKWQDQSGADRYSTEVVLQGFGGTLTMLDGPGGGSGGGGGGGGYGGGGGGGNDYGYDSGPSSSGGGGGGGSRDL
DDEIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=777317 PL336_RS10200 WP_271687469.1 2063513..2064013(+) (ssb) [Sulfitobacter faviae strain SCSIO W_1865]
ATGGCCGGCTCAGTGAACAAAGTGATCCTTATCGGCAACCTCGGGCGCGACCCCGAGGTGCGGTCGTTCCAGAACGGCGG
CAAAGTGTGCAACCTGCGCATCGCCACCTCGGAGACATGGAAAGACCGCAACACCGGTGAGCGCCGCGAGAAGACCGAAT
GGCATTCGGTGGCGATCTTTCAAGAAGGGCTCGTCCGCGTGGCCGAGCAATACCTCAAGAAGGGCTCCAAAGTGTATATC
GAGGGCCAGTTGCAGACCCGCAAATGGCAGGACCAATCGGGCGCAGACCGCTATAGCACCGAAGTCGTGCTGCAAGGCTT
CGGCGGCACGCTGACCATGCTCGACGGTCCCGGCGGCGGCTCCGGCGGCGGCGGTGGTGGCGGCGGCTACGGTGGTGGCG
GCGGTGGCGGCAACGACTACGGCTATGACAGCGGCCCGTCCTCTTCGGGCGGCGGTGGCGGCGGCGGTAGCCGTGACCTC
GATGATGAGATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.412

100

0.548
  ssb Glaesserella parasuis strain SC1401

46.524

100

0.524
  ssb Neisseria meningitidis MC58

40.223

100

0.434
  ssb Neisseria gonorrhoeae MS11

40.223

100

0.434