Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | PPTS312_RS04860 | Genome accession | NZ_AP022324 |
| Coordinates | 1082174..1082719 (+) | Length | 181 a.a. |
| NCBI ID | WP_025754600.1 | Uniprot ID | A0A1W2F4H6 |
| Organism | Pseudomonas putida strain TS312 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1077174..1087719
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PPTS312_RS04845 (PPTS312_09720) | bfr | 1077272..1077736 (+) | 465 | WP_016715322.1 | bacterioferritin | - |
| PPTS312_RS04850 (PPTS312_09730) | uvrA | 1077806..1080640 (-) | 2835 | WP_019097630.1 | excinuclease ABC subunit UvrA | - |
| PPTS312_RS04855 (PPTS312_09740) | - | 1080770..1082164 (+) | 1395 | WP_016715324.1 | MFS transporter | - |
| PPTS312_RS04860 (PPTS312_09750) | ssb | 1082174..1082719 (+) | 546 | WP_025754600.1 | single-stranded DNA-binding protein | Machinery gene |
| PPTS312_RS04865 (PPTS312_09760) | - | 1083031..1083489 (+) | 459 | WP_025754601.1 | hypothetical protein | - |
| PPTS312_RS04870 (PPTS312_09770) | - | 1083722..1085104 (-) | 1383 | WP_027609832.1 | PLP-dependent aminotransferase family protein | - |
| PPTS312_RS04875 (PPTS312_09780) | - | 1085304..1086089 (+) | 786 | WP_019096693.1 | sulfite exporter TauE/SafE family protein | - |
| PPTS312_RS04880 (PPTS312_09790) | - | 1086111..1086872 (+) | 762 | WP_084297509.1 | SDR family NAD(P)-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 181 a.a. Molecular weight: 20116.21 Da Isoelectric Point: 5.9286
>NTDB_id=77731 PPTS312_RS04860 WP_025754600.1 1082174..1082719(+) (ssb) [Pseudomonas putida strain TS312]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQGGDPYNQGGGNYNQGGQQQQYNQAPPRQQAQRPQQAPQRPA
PQQPAPQPAADFDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQGGDPYNQGGGNYNQGGQQQQYNQAPPRQQAQRPQQAPQRPA
PQQPAPQPAADFDSFDDDIPF
Nucleotide
Download Length: 546 bp
>NTDB_id=77731 PPTS312_RS04860 WP_025754600.1 1082174..1082719(+) (ssb) [Pseudomonas putida strain TS312]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCTACCAGCGAGCAGTGGACCGACAAGCAGTCGGGCCAGAAGGTAGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAGATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGTGCTACATCGAA
GGCAAACTGCAGACCCGTGAGTGGGAAAAAGACGGTATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAACTGCTGGGCGGTCGTCCGCAGGGCCAGCAGGGCGGTGACCCGTACAACCAGGGTGGCGGCAACTACAACCAAG
GTGGTCAGCAGCAACAGTACAACCAGGCCCCGCCGCGCCAGCAGGCCCAGCGCCCGCAACAGGCCCCTCAGCGCCCGGCG
CCGCAGCAGCCAGCGCCACAGCCGGCGGCTGACTTTGACAGCTTTGATGACGATATTCCGTTCTGA
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCTACCAGCGAGCAGTGGACCGACAAGCAGTCGGGCCAGAAGGTAGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAGATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGTGCTACATCGAA
GGCAAACTGCAGACCCGTGAGTGGGAAAAAGACGGTATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAACTGCTGGGCGGTCGTCCGCAGGGCCAGCAGGGCGGTGACCCGTACAACCAGGGTGGCGGCAACTACAACCAAG
GTGGTCAGCAGCAACAGTACAACCAGGCCCCGCCGCGCCAGCAGGCCCAGCGCCCGCAACAGGCCCCTCAGCGCCCGGCG
CCGCAGCAGCCAGCGCCACAGCCGGCGGCTGACTTTGACAGCTTTGATGACGATATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
56.831 |
100 |
0.575 |
| ssb | Glaesserella parasuis strain SC1401 |
49.735 |
100 |
0.519 |
| ssb | Neisseria gonorrhoeae MS11 |
48.37 |
100 |
0.492 |
| ssb | Neisseria meningitidis MC58 |
48.634 |
100 |
0.492 |